Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0937 ATGAACATGGATATGTGCCAAAATGTATCAGTTTCCGGTGAGTGCCAACAAGTGCAGGTTTTTGCCCCTTCTTGCTCAAGCAGCCTTGATGACCTCTTCTCTGCTCAGAACACGGAAGTGGATGTTGAGTTGGAGTGGCTTTCAGAGTTTGTTGAAGACTGTTTTTCAAGCCCTCCAAGCTGTGTCTTGGTACCTATTGGTGTCAAGACTACAAGCACAAGCACCAACCTTTCTTCAGGCACATTGAAGAGACCCCAACAACAAAATGAGTCACCTTTGCAAAACTTTGCTGTGCCAGGGAAGGCAAGGAGCAAAAGGAAGAGGCTTTCAGCCCCAAGAGCCAACAAAGACCCTCTAAACATATGGTCACACCATTTGAATCCTCAAAATGAGTCCTTGTGTTCTGACCCTCCTCTTCTCAAACAGGCTTATTGGTTAGCTGACAGTGAGCTCATCATGCCAAAGCCAAAGGATGAGGAGCAAGAAGAGGTGGTGACCAAAGAGGATGAAAAAGTGATTAATGTGATGAGCAAGGAAAGCTTTGGGGACTCTGAGCTTGAGGAGGGTAGCAATGGTCAACAACCAATGCCAACAAGGAGGTGCAGCCATTGCTTGGCTCAGAGGACCCCGCAGTGGAGGGCAGGACCATTAGGTCCAAAGACACTATGCAATGCATGTGGAGTGAGGTACAAGTCTGGTAGGTTGCTACCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTTAGCTACTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGGCTGTTTTCTCCACCATTTCTAGTGAGCAGTAG 825 0.4739 MNMDMCQNVSVSGECQQVQVFAPSCSSSLDDLFSAQNTEVDVELEWLSEFVEDCFSSPPSCVLVPIGVKTTSTSTNLSSGTLKRPQQQNESPLQNFAVPGKARSKRKRLSAPRANKDPLNIWSHHLNPQNESLCSDPPLLKQAYWLADSELIMPKPKDEEQEEVVTKEDEKVINVMSKESFGDSELEEGSNGQQPMPTRRCSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVFSTISSEQ* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0937 274 Pfam GATA zinc finger 201 235 IPR000679 GO:0006355|GO:0043565
Gso19g0937 274 ProSitePatterns GATA-type zinc finger domain. 201 226 IPR000679 GO:0006355|GO:0043565
Gso19g0937 274 CDD ZnF_GATA 200 247 IPR000679 GO:0006355|GO:0043565
Gso19g0937 274 ProSiteProfiles GATA-type zinc finger domain profile. 195 231 IPR000679 GO:0006355|GO:0043565
Gso19g0937 274 Gene3D - 192 263 IPR013088 GO:0006355|GO:0008270
Gso19g0937 274 SMART GATA_3 195 249 IPR000679 GO:0006355|GO:0043565
Gso19g0937 274 PANTHER GATA TRANSCRIPTION FACTOR 3 274 - -
Gso19g0937 274 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 259 - -
Gso19g0937 274 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 274 - -
Gso19g0937 274 MobiDBLite consensus disorder prediction 73 95 - -
Gso19g0937 274 MobiDBLite consensus disorder prediction 73 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0937 Gso-Chr19 36386221 36387655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0937 42 263 C2C2-Gata Transcription Factor Family AT4G32890 42.291 2.48e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso19g0937 GATA 7e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0937 - - gmx:100786479 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0937 19 36386221 36387655 Gso16g0346 16 3896815 3898223 GST
Gso19g0937 19 36386221 36387655 Gso16g1224 16 31568766 31570664 PCT
Gso19g0937 19 36386221 36387655 Gso2g0593 2 6185565 6187457 PCT
Gso16g1224 16 31568766 31570664 Gso19g0937 19 36386221 36387655 PCT
Gso2g0593 2 6185565 6187457 Gso19g0937 19 36386221 36387655 PCT