Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0932 ATGGCTAGCAATCCTTCCCCTCACGGGCACATGCATCAGCATCAGTTTGCGTTACAGGGCACAGAGTCAAAGCCTTGTGACGCAGAATCACTGGTGCCGGCGACCCTTTTGATTAAGCACTTGCCAGAAGCCATTCCTGACGTCACCCTCTCTCGGATCTTGGCCAATTTCGGCGCTTCCTCAGTTCGCCCTTGCTCTACTGGCAGGTTGAGAAATTGTGCTTTTGCGGATTTCAAAAATGAGATTGTGGCATCTCAAGCACAACGGCAACTAAATGGGTTGAGATTTCTTGGTAAAGTCTTGTCAGCAGAGAGAGCTAGTAACCCAACTGAGAATGGTGAAAAAAGTAGCGGAGACCAGTTGGGAAAGGACTCTAAAACATCAATGCTGAAGAATGCAAATGTAACCAAACCTATTGATGGAGATACAAAATCAGGAGCCCTCCCTATTCCTGAACCTATTGCTGATAGACTTGGTGTCAATTATCCATTTCCTCCACATCTTGAGTATGCTTACCCTCCACCTGATGGAAATATATTGACCAATATTGTGAATGCTCTAATTGCTGTTCCTCGCTTTTACACTCAGGTTCTACACTTGATGAACAAAATGAACATCCCGGCTCCGTTTCGTATGGCACTGCCCACACCTCCATTACCTCCAGAGGTACCAGCACCGCCACCACCTCTACCTGCACCTACTGTAACTGTGAATCCTTGGTCTGCAGATCTGTCTAGTGGCGAATCTGAGATGGAATCTTCAGATGAGGAGGATGAAGCAAGAATAAGAAAGTCTGGACAAAAGCGTGCCAGGCGTGAGACCATTGTTGGCCCTGCTATTGATAAGGGTGTGGCTCATGAGTCTGTTGGAGTAAAACCAGCCACCTTGGTTCCAAAGGAAATCCCTGTGATAAAAAAGAACCATGTCTTAAAGATAAACATTGTTCCCAAAGCAACAGTGAAAGAACATAAAGATGATGACACAACACAAGAGTTACAAGAGCCAGAAAAAGATGTTCCGGATCCTAACAAATTTTTGACTCCAGATGAATTGGAGAGAGGAAAGTTGCCTCCTGAGGAAATCTTATCCCTTCCAATGTTTAAGAACTATACAGCTGGAAATCCTGCTCCTGTGTTGTATATTAAGAATTTGGCAAAAGATGTGATTGCTGATGATTTCTATTTTATATTTGGCTCCTTGTTTGGAAGTATTGATGCTGCTAAGTCTGGTCTTCAAGTCAAACTGATGCAGGAAGGACGGATGAGGGGTCAAGCGTTTATAACGTTTCCCTCCATTGAGTTGGCCCATCATGCTTTGAATCTAGTGAATGGATATGTATTAAAAGGCAAGCCAATGATCATCCAGTTTGGTCGAAATCCTACTGCTGCTAAGGCAACTTAA 1401 0.4418 MASNPSPHGHMHQHQFALQGTESKPCDAESLVPATLLIKHLPEAIPDVTLSRILANFGASSVRPCSTGRLRNCAFADFKNEIVASQAQRQLNGLRFLGKVLSAERASNPTENGEKSSGDQLGKDSKTSMLKNANVTKPIDGDTKSGALPIPEPIADRLGVNYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPEVPAPPPPLPAPTVTVNPWSADLSSGESEMESSDEEDEARIRKSGQKRARRETIVGPAIDKGVAHESVGVKPATLVPKEIPVIKKNHVLKINIVPKATVKEHKDDDTTQELQEPEKDVPDPNKFLTPDELERGKLPPEEILSLPMFKNYTAGNPAPVLYIKNLAKDVIADDFYFIFGSLFGSIDAAKSGLQVKLMQEGRMRGQAFITFPSIELAHHALNLVNGYVLKGKPMIIQFGRNPTAAKAT* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0932 466 MobiDBLite consensus disorder prediction 105 146 - -
Gso19g0932 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 379 451 IPR000504 GO:0003723
Gso19g0932 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 101 IPR000504 GO:0003723
Gso19g0932 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 377 459 IPR000504 GO:0003723
Gso19g0932 466 MobiDBLite consensus disorder prediction 1 20 - -
Gso19g0932 466 MobiDBLite consensus disorder prediction 322 351 - -
Gso19g0932 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 108 IPR000504 GO:0003723
Gso19g0932 466 MobiDBLite consensus disorder prediction 222 273 - -
Gso19g0932 466 MobiDBLite consensus disorder prediction 105 134 - -
Gso19g0932 466 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 29 465 - -
Gso19g0932 466 Gene3D - 372 466 IPR012677 -
Gso19g0932 466 MobiDBLite consensus disorder prediction 256 273 - -
Gso19g0932 466 Gene3D - 4 124 IPR012677 -
Gso19g0932 466 CDD RRM2_RBM40_like 378 457 - -
Gso19g0932 466 PANTHER UNCHARACTERIZED 29 465 IPR045164 -
Gso19g0932 466 CDD RRM1_RBM40_like 35 106 IPR034147 GO:0005515
Gso19g0932 466 SMART rrm1_1 35 104 IPR000504 GO:0003723
Gso19g0932 466 SMART rrm1_1 378 455 IPR000504 GO:0003723
Gso19g0932 466 SUPERFAMILY RNA-binding domain, RBD 34 460 IPR035979 GO:0003676
Gso19g0932 466 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0932 Gso-Chr19 36248053 36258998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0932 379 455 Eukaryotic Initiation Factors Gene Family AT3G16380 32.468 1.22e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0932 K13157 - gmx:100814307 886.715