Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0931 ATGGAAGAGCCTATTGTGGTGAACAAAGGTGAGGAGCCTCTAGATTTGCCTCCAGGTTTCAGGTTCCACCCTACAGATGAAGAGATAATCACTTATTATCTCACTGAGAAGGTGAGGAATAGCAGTTTCAGTGCAATTGCTATTGGAGAGGCTGATTTGAACAAGTGTGAACCTTGGGATTTACCAAAGAAAGCCAAGATAGGGGAGAAAGAGTGGTACTTCTTCTGCCAAAAGGATAGGAAGTACCCAACTGGGATGAGGACCAATAGAGCAACAGAATCTGGGTACTGGAAGGCCACAGGAAAAGATAAGGAGATTTACAAAGGGAAAGGGAACCTTGTGGGGATGAAGAAGACCCTTGTGTTCTATAGAGGGAGAGCTCCAAAGGGGGAGAAGACCAATTGGGTCATGCATGAGTTCAGATTGGAGGGCAAATTTGCAAGTTACAACCTTCCTAAGGCAGCAAAGGATGAATGGGTTGTCTCAAGGGTTTTTCACAAGAACACAGATGTCAAAAAGTCCTCAACTCCTGGCCTTTTGAGGATAAACTCTATTGGGGATGATCTTCTTGATTATTCTTCACTACCACCTCTCATGGATCCTCCTTATGGCAACACCAACACCACCAACAACACTAACCCACTTTCTTCATCAACTAAATCACAATCAGAGGGCTATTATCTTCCCAGTTTCTCCATCAACAACCACCAGCAGCAGCTTCTCATCAAGCCAGAAGATCACCACCACCACAGAAGCTATAATGAGATTCCCACAATTAACTACACCTCAAACCAAGCCAATCTCAGCAACAACGTTAACGCAATGGGCAACAACACTCTCTCACAGCCCTTAAACATGTTCTCAGCTGATTACTATGTGCACCAAAACAGGATCAAAAGTTCCATCATGCCAAGTGTTGCAGGCTCAGATTTTGTTAACAACAACAATAACCATCATGAAGCTATCCTAAGAGCATTTGCAGCCAAGAACAACGAGCACATACAGTGCAAGATGGAGCAATTTTCTTCTAATCACTCACAAGACACGGGCTTGAGCAACGACAGAAACACTACTGACACATCCTCTGTGGTTTCGAAGCAGCAAGACAACAACATGGGAAGAAATAATAATAGGGCATTGTACGAGGATCTTGAAGGCCCTTCTTCAGTTGCACCTCTCTCAGATTTGGAATGCCTGCAGTGGGATGATGACTACTGA 1218 0.4417 MEEPIVVNKGEEPLDLPPGFRFHPTDEEIITYYLTEKVRNSSFSAIAIGEADLNKCEPWDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFASYNLPKAAKDEWVVSRVFHKNTDVKKSSTPGLLRINSIGDDLLDYSSLPPLMDPPYGNTNTTNNTNPLSSSTKSQSEGYYLPSFSINNHQQQLLIKPEDHHHHRSYNEIPTINYTSNQANLSNNVNAMGNNTLSQPLNMFSADYYVHQNRIKSSIMPSVAGSDFVNNNNNHHEAILRAFAAKNNEHIQCKMEQFSSNHSQDTGLSNDRNTTDTSSVVSKQQDNNMGRNNNRALYEDLEGPSSVAPLSDLECLQWDDDY* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0931 405 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Gso19g0931 405 MobiDBLite consensus disorder prediction 341 378 - -
Gso19g0931 405 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 371 - -
Gso19g0931 405 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100-LIKE 3 371 - -
Gso19g0931 405 MobiDBLite consensus disorder prediction 341 377 - -
Gso19g0931 405 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Gso19g0931 405 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Gso19g0931 405 MobiDBLite consensus disorder prediction 200 227 - -
Gso19g0931 405 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0931 Gso-Chr19 36239573 36241742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0931 1 384 NAC Transcription Factor Family AT5G18270 49.624 9.82e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso19g0931 NAM 4.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0931 - - gmx:100784372 818.535