Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0925 ATGGTTGGTGCTATAAAAGCAGCGATTGGAGACGCAGTGTTGACTTTCATGTGGGTGTTCTGTTCCTCTGTGTTGGGAATTGCTTCTGGGTACATAACCAATGCCCTTAACCTTCAACACATCACCTACAATGGGTTCCCTTACGCTTCTTTTCTTGTCACCACCACCCTCGTTTTTGTTCTTGTTTTTCTTTTCACCATCATCGGCAATGTTCTTGGTGGGGCCAGCTTCAACCCAACCGGCACCGCTTCCTTCTACGCTGTTGGTCTTGGTTCGGATACGCTCTTCTCAATGGCGCTTCGGTTCCCTGCGCAGGCAGCTGGTGCTGCGGGTGGTGCAATGGCAATTATGGAAGTGATTCCTGCGAAGTACAGGCACATGATTGGGGGGCCTTCTTTGAAAGTGGATTTGCACACCGGGGCTGTCGCTGAAGGGGTGTTGACCTTTGTGATTACCTTTGCTGTTCTCCTCATCTTCCTCAGGGGCCCTCGTAGTGACTTGTTGAAGACTTGGTTACTGGCCACGGCAACTGTAGTTTTGGTCATGGTTGGATCTGCCTACACTGGGCCTGCCATGAATCCTGCTAATGCTTTTGGCTGGGCATACTTAAACAACTGGCACAACACATGGGACCAATTCTATGTATACTGGATTTGTCCCTTCACCGGAGCAATATTGGCTGCTTGGCTGTTCCGTGCTGTCTTTCCTCCACCACCACCACCAGAAGTAAAACAGAAGAAAGCATGA 747 0.4993 MVGAIKAAIGDAVLTFMWVFCSSVLGIASGYITNALNLQHITYNGFPYASFLVTTTLVFVLVFLFTIIGNVLGGASFNPTGTASFYAVGLGSDTLFSMALRFPAQAAGAAGGAMAIMEVIPAKYRHMIGGPSLKVDLHTGAVAEGVLTFVITFAVLLIFLRGPRSDLLKTWLLATATVVLVMVGSAYTGPAMNPANAFGWAYLNNWHNTWDQFYVYWICPFTGAILAAWLFRAVFPPPPPPEVKQKKA* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0925 248 Pfam Major intrinsic protein 4 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g0925 248 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g0925 248 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g0925 248 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g0925 248 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g0925 248 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g0925 248 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g0925 248 PANTHER AQUAPORIN SIP1-1 3 247 IPR044222 GO:0015250
Gso19g0925 248 SUPERFAMILY Aquaporin-like 4 244 IPR023271 -
Gso19g0925 248 Gene3D Glycerol uptake facilitator protein. 3 240 IPR023271 -
Gso19g0925 248 PANTHER AQUAPORIN SIP1-1 3 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0925 Gso-Chr19 36101027 36111441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0925 2 248 Major Intrinsic Protein MIP AT5G18290 56.855 7.89e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0925 K09875 - gmx:102669186 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0925 19 36101027 36111441 Gso16g0361 16 4065810 4071987 GST
Gso19g0925 19 36101027 36111441 Gso19g0925 19 36101027 36111441 PCT
Gso16g0361 16 4065810 4071987 Gso19g0925 19 36101027 36111441 PCT
Gso19g0925 19 36101027 36111441 Gso16g0361 16 4065810 4071987 PCT