Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0911 ATGACGGATTCTCTCAACAAGATGTCGTCGCTATTAAATTCTTCAATAGAGACCATAGCAGGATCTAACCTCTCCTCAGTAGCATCCATTACTCGATCTCCTAGATCCCATCCCAATTCCATTCCATCAGCCATGAGTTTTCAAGACATCCAAACTGGCCCCAACCCTTCCTCTCGCCGGAACCAGTCCCCTTCGCAGGCCGTCGCCGCCGGAATTTTCCAGATCAACACCGCCGTCGCTGCTTTCCGGCGACTCGTCGATGGTGTTGGAACCCTCTCCTTTATCATTTGTTTGTTTGTAAACAGCTCTGGCTCTGGTGAAGAATCGGTTGGGATAGATGTGGAAAGCCAACCTTTTATCAGAGAGCAGAAGAGGCAAGAGATACTTCTATTGGATAATGAAATATCCTTCAACGAGGCCATGATTGAAGAAAGAGAACAGGGAATTAGAGAGGTAGAGGAGCAAATTGAACAAGCAAATGAAATATTCAAGGACCTAGCTGTTCTGGTTCATGATCAGGGTGTTGTTATTGATGACATTCATTCAAATATTGATGCTTCTGCTGGTGCTACAACCCAAGCTAGGGTACAGCTAGCCAAGGCTTCCAAAAGTGTGAAATCCAAAACCTCATGGTGTTGGTGGGTGCTTGCAATTTTTGTGGTGGTGCTGGTCATCTTACTTGTTGTACTCATTCTTTAG 699 0.4549 MTDSLNKMSSLLNSSIETIAGSNLSSVASITRSPRSHPNSIPSAMSFQDIQTGPNPSSRRNQSPSQAVAAGIFQINTAVAAFRRLVDGVGTLSFIICLFVNSSGSGEESVGIDVESQPFIREQKRQEILLLDNEISFNEAMIEEREQGIREVEEQIEQANEIFKDLAVLVHDQGVVIDDIHSNIDASAGATTQARVQLAKASKSVKSKTSWCWWVLAIFVVVLVILLVVLIL* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0911 232 Pfam SNARE domain 176 227 IPR000727 -
Gso19g0911 232 CDD SNARE_Qa 142 200 - -
Gso19g0911 232 PANTHER SYNTAXIN 101 231 IPR045242 -
Gso19g0911 232 PANTHER SYNTAXIN 58 91 IPR045242 -
Gso19g0911 232 PANTHER SYNTAXIN-22-LIKE 58 91 - -
Gso19g0911 232 PANTHER SYNTAXIN-22-LIKE 101 231 - -
Gso19g0911 232 SMART tSNARE_6 134 201 IPR000727 -
Gso19g0911 232 MobiDBLite consensus disorder prediction 29 65 - -
Gso19g0911 232 Coils Coil 142 169 - -
Gso19g0911 232 Gene3D - 133 232 - -
Gso19g0911 232 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 139 201 IPR000727 -
Gso19g0911 232 SUPERFAMILY SNARE fusion complex 127 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0911 Gso-Chr19 35719186 35722188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0911 45 91 SNARE and Associated Proteins AT5G46860 52.941 5.23e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0911 - K08488 gsj:114398794 371.703