Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0897 ATGGCCGAAGAATTTGTGAAGGGCTCTGTTCATCAAAACGGTGTCGCTGTCATAACCCTCAATCGCCCCAAAGCATTTCTCAGAGTCATAGATGATGGGAGGAAGAGCATTAACATGCAGCATTTCAGAGTCATAGATGATGGGAGGAAGAGCATTAACATGCAGCATTTCAAAGTCATAGATGATGGGAGGAAGAGCATTAACATGCAGGCTATCTGGAAACAACATAAACCAATCAGAGAAGGAATATCAACTTGTCTAGCACGATTGGGTGATCTCAGTTCTCTTGAACAACATGGATTTGTAGGAAACAGGATGTGGTCATTGGATAGGGACCCTTCACCTCTTCCTCCCTTAGACAATCAGTCATTTGTGGAACTAATATTGAAGTCAACAAAAGTTGACTTAAAGACACCCTGTAGTTTTGAGTTTCGGCTTCGCATCTCTCTCAATGCTGACAACCTAATTTTGATTCCGCAAATTGTGTTTGATGATGAAAGCTATGGTACTGTGGATGAGGATGAAAAAACCTATGACCAAATTGAAAGTCGAGGAATTGCTCCTATAGTAATTCCACCTATTGACTTCATGAACAAGTATTTGGAAAAGAACATTCATGCAAAATACATGCTTCAAGTTCACCATCAAGTTTATTCAGAGAGAGAAAAGAGGCCAATTTATTGTGTTCATAGAAATAAGACTATAGAAAAACCTTTCATAGAGTTAGACAAGGTGGATCGAAGGCATGGGAAGAGGCCTTTCCCTTCTGATCATGCATCAAGGGAGGAGAGGGAAGGTTTCAACTTTTCTGTTCTTCCATCTCCACCTAAGAGCCAAGGGGAAGAAGCTTCTCAATTTTCCTTTATACATCCAATCAATAATACTAGTGATGATAGCACCCCTTCCACACCAATTCCACAATATGGGCAAATAAGCAATTCTTGCTTGATTGAGACTCAGGACCCATCCCAACAGCCTTTAAATCAAGGAGGCAATGGGAGAAAAAGACACTATAGAGGAGTTAGGCAGAGACCGTGGGGTAAATGGGCTGCCGAAATCCGCGACCCTAAAAAGGCTGCTAGAGTGTGGCTTGGCACGTTTGACACGGCAGAGGCTGCTGCTGCTGCTTATGATGCTGCTGCTTTGAAGTTCAAAGGCTCTAAAGCCAAGCTCAATTTCCCAGAACACGTTCTTGTTCCTCCTCCTCCAATATCATCATCACCTTATAATAATAATCATCAAAATAATCATAGTTATTGTTATGGTTCTTCAGCTCTTGCACCACCACCTCCACTACCACTACCATCATCACAACACGTTTATGATCAACCACAACAACCCTTGTTATCATCATCATCACAAGAAGAAGGGTTTCCAAATCTAATGCAGTACGCGCAGCTTCTTTGGAGTAGGGATGATGATGATCTACAACGTGTTGCTTCGGGCCTTCATCATCAACAACATCATCATCATCATCATCCCAATGAAGCTTTCTATGATTCAAGTTCTTCAACTTTGTTCTCATCATCGTCCACTACTTCTTCTATGGCTGTGTCTGATCAACAGCAGATTGGAGATGACACGAGTACTGCTCCCAAAAGGGGAGAATATTATGACTCTTGCTTTTTTAGAGGGAATGATTTTCATGACAAGAATTGA 1659 0.4165 MAEEFVKGSVHQNGVAVITLNRPKAFLRVIDDGRKSINMQHFRVIDDGRKSINMQHFKVIDDGRKSINMQAIWKQHKPIREGISTCLARLGDLSSLEQHGFVGNRMWSLDRDPSPLPPLDNQSFVELILKSTKVDLKTPCSFEFRLRISLNADNLILIPQIVFDDESYGTVDEDEKTYDQIESRGIAPIVIPPIDFMNKYLEKNIHAKYMLQVHHQVYSEREKRPIYCVHRNKTIEKPFIELDKVDRRHGKRPFPSDHASREEREGFNFSVLPSPPKSQGEEASQFSFIHPINNTSDDSTPSTPIPQYGQISNSCLIETQDPSQQPLNQGGNGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGSKAKLNFPEHVLVPPPPISSSPYNNNHQNNHSYCYGSSALAPPPPLPLPSSQHVYDQPQQPLLSSSSQEEGFPNLMQYAQLLWSRDDDDLQRVASGLHHQQHHHHHHPNEAFYDSSSSTLFSSSSTTSSMAVSDQQQIGDDTSTAPKRGEYYDSCFFRGNDFHDKN* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0897 552 MobiDBLite consensus disorder prediction 290 309 - -
Gso19g0897 552 MobiDBLite consensus disorder prediction 320 340 - -
Gso19g0897 552 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 297 537 - -
Gso19g0897 552 CDD AP2 337 396 IPR001471 GO:0003700|GO:0006355
Gso19g0897 552 PANTHER DNA-BINDING DOMAIN 297 537 IPR044808 GO:0003700|GO:0009873
Gso19g0897 552 ProSiteProfiles AP2/ERF domain profile. 337 394 IPR001471 GO:0003700|GO:0006355
Gso19g0897 552 MobiDBLite consensus disorder prediction 498 529 - -
Gso19g0897 552 MobiDBLite consensus disorder prediction 248 283 - -
Gso19g0897 552 SUPERFAMILY DNA-binding domain 337 395 IPR016177 GO:0003677
Gso19g0897 552 Gene3D - 57 166 IPR014718 GO:0030246
Gso19g0897 552 SMART rav1_2 337 400 IPR001471 GO:0003700|GO:0006355
Gso19g0897 552 MobiDBLite consensus disorder prediction 248 265 - -
Gso19g0897 552 PRINTS Ethylene responsive element binding protein signature 338 349 IPR001471 GO:0003700|GO:0006355
Gso19g0897 552 PRINTS Ethylene responsive element binding protein signature 360 376 IPR001471 GO:0003700|GO:0006355
Gso19g0897 552 Gene3D AP2/ERF domain 336 396 IPR036955 GO:0003700|GO:0006355
Gso19g0897 552 Pfam AP2 domain 337 386 IPR001471 GO:0003700|GO:0006355
Gso19g0897 552 MobiDBLite consensus disorder prediction 438 456 - -
Gso19g0897 552 MobiDBLite consensus disorder prediction 482 532 - -
Gso19g0897 552 MobiDBLite consensus disorder prediction 423 456 - -
Gso19g0897 552 SUPERFAMILY Galactose mutarotase-like 70 150 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0897 Gso-Chr19 35278165 35303093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0897 320 397 AP2-EREBP Transcription Factor Family AT5G61890 81.481 2.24e-36 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso19g0897 Aldose_epim 2.2e-05 CL0103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0897 - - gsj:114398791 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0897 19 35278165 35303093 Gso16g0393 16 4477208 4479422 GST
Gso16g1185 16 31089966 31092264 Gso19g0897 19 35278165 35303093 GST
Gso19g0897 19 35278165 35303093 Gso16g1320 16 32598981 32601745 PCT
Gso19g0897 19 35278165 35303093 Gso2g0660 2 6812491 6814731 PCT
Gso16g1185 16 31089966 31092264 Gso19g0897 19 35278165 35303093 PCT
Gso19g0897 19 35278165 35303093 Gso19g0897 19 35278165 35303093 PCT
Gso19g0897 19 35278165 35303093 Gso16g0393 16 4477208 4479422 PCT