Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0879 ATGAATATGGAGCGCTACACGCTACCGGCACCACCCAATATTATTCCCGAGGAAGAAGAAAACATTGCCATTGCCATGGGTGCCCCTCTTATCCCTTCCTTTAAATCCATGCTTCAACAACACCCTCAACAACTTGACTCTTACTTTAACTCTTCAATTAGTTCTACTACTATCCCTTTTGTTCCTAACATGGACTCTTTTCTCTCTCTTGACCCTTTCTCACCTTCTTTCTTCAACAACAGCAGCAGCAGCAACATGGCCCTCGACCCGGGTTTTGATTTGGGCCTGGACACTGGGCTTCACTCTTCTGCTCCTGCTCCCCATCTTTTTTCCCAGGCCCACATGATGGGCTTCGAGTTCTCGGACCTCGAAGCCCTGGCTGGACCTGGGAATGTAAATGTCCCGTTTGCGGACGGGGCAAAGGCGGCTGCTCTGCTGCGGTCTCCTCATTTCGAGCCGCCGCAGCAGCAGCCGACGCTGTACCGGAAGCGGAGGGGGACAGCCGCGGAGATTCCGGGGCTGGAGATGGTGAGAAGGAAGGGGAGGAAGTGGCAGGAAGGAGGAGGGGAGGGTGAGGAAGGGAGCAGTGCTGACGTGGGCGGTTCCGGGTTGAACTATGAGTCTGATGAGCAGAATGAGAGCAATGGGTTGAAGCTGAGTGAGAATGGTGGAGATAACAAGGGGAAGAAGAAGGGGCTGCCCGCCAAGAATCTCATGGCGGAGAGGCGCCGCCGGAAGAAGCTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTCCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTGCTGCAGCGGATTAATGATCTTCATCACGAGCTGGAGTCAACTCCACCTGGCTCGTCGCTGACACCTTCTTCTTCTACAAGCTTTCAGCCTTTAACACCCACCCTGCCAACCCTTCCCTGTCGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGGTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAAGGCTTTGGATAACCTCGGATTGGATGTACAGCAGGCTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCTGAGCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGGTGCTCTCGGATTCTGCTGGCTTCCATGGTATGATGTGA 1278 0.5196 MNMERYTLPAPPNIIPEEEENIAIAMGAPLIPSFKSMLQQHPQQLDSYFNSSISSTTIPFVPNMDSFLSLDPFSPSFFNNSSSSNMALDPGFDLGLDTGLHSSAPAPHLFSQAHMMGFEFSDLEALAGPGNVNVPFADGAKAAALLRSPHFEPPQQQPTLYRKRRGTAAEIPGLEMVRRKGRKWQEGGGEGEEGSSADVGGSGLNYESDEQNESNGLKLSENGGDNKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHHELESTPPGSSLTPSSSTSFQPLTPTLPTLPCRVKEELYPGTLPSPKNQAAKVEVRVREGRTVNIHMFCTRRPGLLLSTMKALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVLPEQIKAVLSDSAGFHGMM* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0879 425 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 232 281 IPR011598 GO:0046983
Gso19g0879 425 Pfam Helix-loop-helix DNA-binding domain 239 281 IPR011598 GO:0046983
Gso19g0879 425 MobiDBLite consensus disorder prediction 293 311 - -
Gso19g0879 425 CDD ACT_UUR-ACR-like 354 395 - -
Gso19g0879 425 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 235 302 IPR036638 GO:0046983
Gso19g0879 425 MobiDBLite consensus disorder prediction 201 221 - -
Gso19g0879 425 MobiDBLite consensus disorder prediction 292 311 - -
Gso19g0879 425 MobiDBLite consensus disorder prediction 175 189 - -
Gso19g0879 425 MobiDBLite consensus disorder prediction 149 243 - -
Gso19g0879 425 CDD bHLH_AtAMS_like 235 295 - -
Gso19g0879 425 SMART finulus 238 287 IPR011598 GO:0046983
Gso19g0879 425 PANTHER BHLH TRANSCRIPTIONAL FACTOR 45 425 - -
Gso19g0879 425 Gene3D - 226 295 IPR036638 GO:0046983
Gso19g0879 425 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 45 425 - -
Gso19g0879 425 MobiDBLite consensus disorder prediction 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0879 Gso-Chr19 35008422 35012131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0879 157 398 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 71.545 2.36e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso19g0879 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0879 - - gmx:100217333 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0879 19 35008422 35012131 Gso16g0406 16 4669131 4673211 GST
Gso16g1183 16 31047873 31052198 Gso19g0879 19 35008422 35012131 GST
Gso19g0879 19 35008422 35012131 Gso16g1183 16 31047873 31052198 PCT
Gso19g0879 19 35008422 35012131 Gso19g0879 19 35008422 35012131 PCT
Gso16g0406 16 4669131 4673211 Gso19g0879 19 35008422 35012131 PCT
Gso16g1183 16 31047873 31052198 Gso19g0879 19 35008422 35012131 PCT
Gso19g0879 19 35008422 35012131 Gso16g0406 16 4669131 4673211 PCT