Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0871 ATGGCTCTCCCAGACTCTTCTTCCCGTCGCAACTCCCTGATCCCCTCCTTCATCTACTCCTCTTCCTCCAAAACGCTCCCTCTCCACCACATGCTCAACACCGCCTCCGCTGCCGCCGCCGCCGCTCCCTCCCCGCCGCCGGCCAATCTCGACGCCGGATCGCGTGGCCTCATGATTCCCTCTCCCAGCGAGTCACGCAAGATCGAGTTGTACTCCCCCGCCTTCTACGCCGCCTGCACCGCCGGTGGAATCCTCAGCTGTGGCCTCACTCACATGACCGTCACTCCTCTTGACCTAGTCAAGTGTAATATGCAGATTGACCCTGCTAAGTACAAGAGCATCTCGTCTGGTTTTGGAGTTTTGCTTAAGGAGCAGGGATTCAGGGGCTTTTTTCGTGGCTGGGTGCCTACCTTGCTTGGTTATAGTGCTCAGGGTGCTTGCAAATTTGGATTTTACGAGTTCTTTAAGAAGTACTATTCTGATATTGCTGGCCCAGAGTATGCAAGCAAGTACAAGACCTTGATCTACCTTGCTGGTTCAGCATCTGCTGAGGTTATTGCTGATATTGCTCTTTGCCCATTTGAGGCTGTGAAGGTCCGTGTCCAAACTCAGCCTGGTTTTGCAAGGGGTTTGTCTGATGGGCTCCCAAAATTTGTCAGATCTGAAGGAACCTTAGGGCTGTACAAGGGGTTAGTGCCTCTCTGGGGACGACAAATTCCATACACAATGATGAAGTTTGCTTCTTTTGAGACCATTGTTGAGCTGATCTATAAGCATGCCATCCCAACACCAAAGAATGAGTGCACCAAAAGCCTGCAACTTGGTGTCAGTTTTGCTGGTGGATATGTTGCTGGTGTACTTTGTGCAATTGTGTCTCATCCTGCTGATAATCTTGTCTCTTTTCTGAACAATGCAAAAGGAGCAACAGTTGGTGATGCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTCCGAATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGAGCTAGCAAAGGCATAG 1128 0.5098 MALPDSSSRRNSLIPSFIYSSSSKTLPLHHMLNTASAAAAAAPSPPPANLDAGSRGLMIPSPSESRKIELYSPAFYAACTAGGILSCGLTHMTVTPLDLVKCNMQIDPAKYKSISSGFGVLLKEQGFRGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYASKYKTLIYLAGSASAEVIADIALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGTLGLYKGLVPLWGRQIPYTMMKFASFETIVELIYKHAIPTPKNECTKSLQLGVSFAGGYVAGVLCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGPAPAAAPAPGSELAKA* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0871 375 ProSiteProfiles Solute carrier (Solcar) repeat profile. 74 158 IPR018108 -
Gso19g0871 375 ProSiteProfiles Solute carrier (Solcar) repeat profile. 272 351 IPR018108 -
Gso19g0871 375 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 6 368 IPR044677 GO:0005315|GO:1990547
Gso19g0871 375 SUPERFAMILY Mitochondrial carrier 77 347 IPR023395 -
Gso19g0871 375 Gene3D Mitochondrial carrier domain 74 352 IPR023395 -
Gso19g0871 375 PANTHER MITOCHONDRIAL PHOSPHATE TRANSPORTER 6 368 - -
Gso19g0871 375 ProSiteProfiles Solute carrier (Solcar) repeat profile. 171 255 IPR018108 -
Gso19g0871 375 Pfam Mitochondrial carrier protein 173 259 IPR018108 -
Gso19g0871 375 Pfam Mitochondrial carrier protein 77 160 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0871 Gso-Chr19 34860983 34864806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0871 7 375 Chloroplast and Mitochondria Gene Families AT5G14040 78.457 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0871 K15102 - gmx:548006 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0871 19 34860983 34864806 Gso16g0410 16 4727401 4731011 GST
Gso16g1180 16 31014595 31018028 Gso19g0871 19 34860983 34864806 GST
Gso19g0871 19 34860983 34864806 Gso16g1180 16 31014595 31018028 PCT
Gso19g0871 19 34860983 34864806 Gso19g0871 19 34860983 34864806 PCT
Gso16g0410 16 4727401 4731011 Gso19g0871 19 34860983 34864806 PCT
Gso16g1180 16 31014595 31018028 Gso19g0871 19 34860983 34864806 PCT
Gso19g0871 19 34860983 34864806 Gso16g0410 16 4727401 4731011 PCT