Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0870 ATGGCGAGCAGGTACTGGGCAGTGTCTCTTCCCGTCCACAACTCGGCATCATCTCAGCTCTGGAACCAATTGCAGGAACGAATCTCCAAGCATTCCTTCGACACACCTCTCTACAGATTCAACATTCCCAACCTCCGCGTCGGAACCCTAGACTCTCTCCTCTCCCTCAGCGATGACCTCGCCAAGTCCAACAATTTCGTCGAAGGAGTCACGCACAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGAGTTTCCGGCATCGACAGCGGCGCCCTCACCGTCGATGGCGTCCCCGTCGATTCCTACTTGACCAGGTTTGTTTGGGATGAGGCAAAGTACCCGACCATGTCGCCTTTGAAGGAGATCGTGGATGGTATTCACAGTCAAGTGGCAAAGATCGAGGATGATCTCAAGGTTCGTGTTTCTGAGTATAACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACAGGAAGCTTAGCAGTTCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAGAAGGATTGGCTCTCAAGCTACGAAACATTGACAAACTATGTGGTCCCCAGGTCTTCTAAGAAGTTGTATGAGGATAATGAATATGCTCTTTATACTGTAACACTCTTCAGTCGTGTTGCGGATAATTTTAGAACTAGTGCACGCGAAAAAGGATTCCAAATTCGTGACTTTGAATACAGTCCAGAAACACATGAGAACCGAAAGCAGGAATTAGATAAATTGGTACAAGATCAGGAAAGATTGAGGACTTCTCTGTTGCAATGGTGCTATACCAGCTATGGAGAGGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCTCCATCCTTCTTGGCATGCGTTTTAGCTCCTTCTGTAAAATCCGAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGAGTGATAGCACAAACAGTGCATACTGGAAGAATGAGGATGAAGTAGGTGCCGGTATGGCTGGCCTAGCAGGTGATGCCGATGGCCACCCGTACGTTTCTTTCACTATCAATCTTGCTTGA 1134 0.4665 MASRYWAVSLPVHNSASSQLWNQLQERISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLAKSNNFVEGVTHKIRRQIEELERVSGIDSGALTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHSQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSNLVKPEDIVTSENLTTLLAIVSKYSQKDWLSSYETLTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREKGFQIRDFEYSPETHENRKQELDKLVQDQERLRTSLLQWCYTSYGEVFSSWMHFCAVRLFAESILRYGLPPSFLACVLAPSVKSEKKVRSILEGLSDSTNSAYWKNEDEVGAGMAGLAGDADGHPYVSFTINLA* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0870 377 SUPERFAMILY Vacuolar ATP synthase subunit C 2 376 IPR036132 GO:0015078|GO:0033180|GO:1902600
Gso19g0870 377 Gene3D - 42 313 - -
Gso19g0870 377 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 377 - -
Gso19g0870 377 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 377 IPR004907 GO:0033180|GO:0046961|GO:1902600
Gso19g0870 377 CDD V-ATPase_C 5 374 IPR004907 GO:0033180|GO:0046961|GO:1902600
Gso19g0870 377 Gene3D - 164 252 - -
Gso19g0870 377 Gene3D Vacuolar atp synthase subunit c; domain 1 7 335 - -
Gso19g0870 377 Pfam V-ATPase subunit C 5 370 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0870 Gso-Chr19 34840719 34846149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0870 1 377 Primary Pumps ATPases(2) AT1G12840 83.820 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0870 K02148 - gmx:100813963 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0870 19 34840719 34846149 Gso16g0411 16 4740879 4746052 GST
Gso16g1179 16 31002557 31008048 Gso19g0870 19 34840719 34846149 GST