Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0869 ATGATGATGGATCAGCGACAGCGAGAGAAGCTGCTTCACAAAACCGAGGCCTGTGCTTTCGTGGCAGGTGTTGTTCCGGAGCTTTCCCTTGTCACCGTTCCAGGGAACAACACCAACAACGTTAACAACAACAACAACGTTGTTTCTCATTCTCAATCTAACGGGTCGGGTCGGATCCAGGAAAACAACCACCACCTTGGACTCGTTGCTGCTGTCACCTCCGCCTTCGGTACCGTTCAAAGGAAGAAAAGGATGGCGAGACAAAGAAGATCCACTAAACCCACTTCGTTGATGAACCATCTCAACAACCATAAGCACAACAAGCCTCGTTCTCTTCCTTCTCCCAGTGCATCCTCCTCGTACGTGGCACTCTCCTCCGCAACTCTCCAGCCCGCACGTGAAATCGATCAAAGAAGGTTGAGATTCCTTTTCCAGAAGGAGTTAAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGATATTGCCAAAGAAAGCAGCAGAGGCTTTCCTTCCAGCTCTTGAATCCAAAGAAGGAATTGTAATCAGCATGGATGATATAGATGGTCTTCATGTATGGAGTTTCAAGTACAGGTTTTGGCCTAACAACAACAGTCGGATGTATGTACTTGAAAATACTGGAGATTTTGTCAACACACATGGCCTTCGCTTTGGAGATTCCATTATGGTTTACCAAGATAGTGAAAACAACAATTATGTTATTCAGGCCAAAAAGGCTTCTGATCAAGATGAATTTATGGAAGAAACTAGTGATACCATCAATGATATCTTCCTTAATGATTATGAGGTGAACAAACCTGGTTGCTTCAATGTAACTAATCCTGCAGTGAATGATACAGGCATGTCATTCATATATGAGACTACCTTCTCAAATGACTCCCCTCTTGACTTTTTGGGTGGATCAATGACCAATTTTTCAAGGATTGGGCCAGTTGAAACCTTTGGCTCTGTTGAGAATTTGTCACTTGATGACTTCTATTAA 999 0.4354 MMMDQRQREKLLHKTEACAFVAGVVPELSLVTVPGNNTNNVNNNNNVVSHSQSNGSGRIQENNHHLGLVAAVTSAFGTVQRKKRMARQRRSTKPTSLMNHLNNHKHNKPRSLPSPSASSSYVALSSATLQPAREIDQRRLRFLFQKELKNSDVSSLRRMILPKKAAEAFLPALESKEGIVISMDDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVNTHGLRFGDSIMVYQDSENNNYVIQAKKASDQDEFMEETSDTINDIFLNDYEVNKPGCFNVTNPAVNDTGMSFIYETTFSNDSPLDFLGGSMTNFSRIGPVETFGSVENLSLDDFY* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0869 332 ProSiteProfiles B3 DNA-binding domain profile. 144 246 IPR003340 GO:0003677
Gso19g0869 332 SMART B3_2 144 246 IPR003340 GO:0003677
Gso19g0869 332 Pfam B3 DNA binding domain 144 242 IPR003340 GO:0003677
Gso19g0869 332 MobiDBLite consensus disorder prediction 80 118 - -
Gso19g0869 332 Gene3D - 140 258 IPR015300 -
Gso19g0869 332 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 38 332 - -
Gso19g0869 332 MobiDBLite consensus disorder prediction 91 118 - -
Gso19g0869 332 SUPERFAMILY DNA-binding pseudobarrel domain 142 241 IPR015300 -
Gso19g0869 332 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 332 IPR044800 GO:0003700
Gso19g0869 332 CDD B3_DNA 142 244 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0869 Gso-Chr19 34828580 34833067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0869 48 332 B3 DNA Binding Superfamily AT3G26790 51.097 8.97e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso19g0869 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0869 - - gmx:100813055 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0869 19 34828580 34833067 Gso16g0412 16 4756285 4760324 GST