Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0860 ATGTTGCCATGCGACTACTGCGACTCCAAACCCGCCTTACTCTTCTGCCGAGCTGATTCCGCTAAACTCTGTTTAGTTTGCGACCAGCACGTGCACGCCGCCAACGCCCTCTCCCTCAAGCACGTGCGCTTCCAGATTTGCGACTCCTGCAAGTCCGACACCGCCGTCCTCCGCTGCTCCACCCACAACCTCGTCCTCTGTCACAACTGCGACGTGGACGCCCACGGTGCCGACGCTTCATCCCTCCACCACCACCACCACCACCGCCGCCGCCTCCACGGCCTCTCCGGCTGTCCCTCCGTCCCGGAGATCGCCTCCGCGCTGGGCCTTGATTTCCGGGCCCAGGAGCCCGTGGTCCCCACCGCCGCCTCCCGCGATGAGGTCTATGAGCAGGTGCTGGAAATTGCGCGCCAGAGGAACAACGGCCTCGGCGCCGAACAACTCAAGCTCGACGACTCACCCGGAAACGACGTCGTTGTTGTTGTTGACGAGATGCTGATTCAGCAGACGCCGTTCACCTCCTTGCTTATGTTGCAGAATTCTGAATCTGAGTTTGACGCTAGAAAAAGTAACGATAACAACGGTTACGGAACCGAGGCATGGGATCTTCACTGGAATTATAATAACCCCGCGTATCAGCCTCCTCAGGTGTGGGATTTTCAATTACAAAAATCAACAGATTGCAATGAACCAAGAGTTGTAACATTTGATGGTCTAGAAGTTCCAAAATTGTTTCAGGATGTGCACAACATGAATTACTCAACAATTGGTGATGATATTGATATTCTATCAAGAAATAATCAATCGGATCAGTCATCATCAAGCCATGCAAAGAGGAAAGAAGAGAGCAACAAAAAAGCTAGAGGTGGGTTATCATCAGAGTCCACATTGTTTGAATCCATACCGTATAGTGGCACCAACAATGTCGTTGTCATGGAGCATCTTGTGGGTGGGAATGAGAATGTTAGCACCTTAAAAGCCAGGGTTAGTTTGCAAGAGTTGGCTAAGAATAGAGGGGATGCCATGTTACGCTATAAGGAGAAGAAGAAAACGCGAAGGTACGACAAGCACATTCGCTATGAATCAAGGAAGGCCAGGGCTGATACTAGAAAAAGGGTGAGAGGGAGATTTGTGAAGGCAAGTGATGTTCAAGCATGA 1158 0.5121 MLPCDYCDSKPALLFCRADSAKLCLVCDQHVHAANALSLKHVRFQICDSCKSDTAVLRCSTHNLVLCHNCDVDAHGADASSLHHHHHHRRRLHGLSGCPSVPEIASALGLDFRAQEPVVPTAASRDEVYEQVLEIARQRNNGLGAEQLKLDDSPGNDVVVVVDEMLIQQTPFTSLLMLQNSESEFDARKSNDNNGYGTEAWDLHWNYNNPAYQPPQVWDFQLQKSTDCNEPRVVTFDGLEVPKLFQDVHNMNYSTIGDDIDILSRNNQSDQSSSSHAKRKEESNKKARGGLSSESTLFESIPYSGTNNVVVMEHLVGGNENVSTLKARVSLQELAKNRGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVRGRFVKASDVQA* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0860 385 MobiDBLite consensus disorder prediction 274 288 - -
Gso19g0860 385 MobiDBLite consensus disorder prediction 264 293 - -
Gso19g0860 385 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Gso19g0860 385 CDD Bbox1_BBX-like 3 46 - -
Gso19g0860 385 ProSiteProfiles CCT domain profile. 338 380 IPR010402 GO:0005515
Gso19g0860 385 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 2 383 - -
Gso19g0860 385 Pfam CCT motif 338 380 IPR010402 GO:0005515
Gso19g0860 385 SMART bboxneu5 1 46 IPR000315 GO:0008270
Gso19g0860 385 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0860 Gso-Chr19 34705498 34709054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0860 1 382 C2C2-CO-like Transcription Factor Family AT2G33500 36.000 8.15e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso19g0860 CCT 8.8e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0860 - - gmx:100786838 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0860 19 34705498 34709054 Gso16g0418 16 4819612 4823643 GST