Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0838 ATGATGAATTCATTGTGTGGAAGCTCACTGTCCCTCAAGAGTGAGAACAACAACTCTAGAACCAAACTCCAACAACCCACTTCTTCAAATGACTCAGTTTTGCAATCCAAGAAAAACAATGCCACTCAATCCTCTGGTGATCTAGACCAAACCAGCCTAACCCCACCAAGCCTAAACCTTCCATCACTCAAATTTGACTTAGATGGAGATGTGGAAGTTCAATCACCAGATAGTTCAATGTGGGAATCTTTTTTTGCTGACCATATAGATGGTGATTTCATGATCTCTTCCCCAGTGAGGACCCCACAAGCAGCCTCTTCCTACAATTGCAACTACAACTATGCTCAGGGAATGCAAGGCCAGAGTCTCTCAGGGTGTTCCCCACCTCGTTTTTCATCATCACAAATTGGAGCCTTCAACAGCAGCAGCAGCCTCAACAAAGGGAAAGGACTCAGCCCCCTCCACAGGGTGTTCAACTCACCCAACAATCAGTACATGCAGCATGTTGAGAACCTCTCACTGCCAGCAATAGAAGAGTTCTTGGAGGACTACCAAACCAAGGTGTCTTCTTCTGATCACAACATTACAAGTTCATCTGAGTGCTTTGACTTGTCATCTCATCAAATCCCTTCGTCCATTTTGGATGGCTTGGCACTGCACAATTCCTCGAGGTACCATCGTGGATCGGTCGTCGACGAAGAATCGACGGTGCACGGTGGTGGCGGTGGTGGTGGTGGCTCTTCTCAGTTGTCACAAGAGAGTGACATCTATCACCAGATGGGGTCCATGGCTAGTGCTTCTCTTTCACAGGCTCTACAACAAGAACGCTACCAAGAGAAACAGCAAAAGCAACAAGCACAACAACTGCAACAACAACAACGGCAGCACCAGCAAGAGAATCTGATGGTGCCTATTCCGATCGAAATCGAGCAGGAGCAAGACAGCGGGCTTCAACTGGTGCACCTGCTCCTGGCTTGCGCAGAAGCAGTAGCCAAAGAGGAATACATGCTCGCAAGAAGGTACCTCCACCACCTCAACCGCGTCGTCACCCCCTTAGGCGATTCCATGCAGCGCGTCGCCGCCTGCTTCACCGACTCCCTAAGCGCCAGGCTCAACTCCACCCTCACACCCAAACCCGCAACGCCGTCCAAACCCCTAACCCCCTCCAACTCCCTCGAGGTCCTCAAGATCTACCAGATCGTCTACCAGGCCTGCCCCTACGTCAAGTTCGCCCACTTCACTGCCAACCAGGCCATCTTCGAGGCTGTCGAGATCGAAGAACGCGTGCACGTCATCGATCTCGACATCCTCCAGGGCTACCAGTGGCCTGCTTTCATGCAGGCCCTCGCGGCGCGCCCAGCGGGCGCACCATTCTTAAGGATTACTGGAGTGGGTCCCTTGTTAGACGCCGTCCGTGAAACCGGACGGTGTCTCACAGAGCTGGCCCACTCCCTACGTATTCCTTTTGAGTTCCACGCGGTCGGGGAACAACTTGAAGATCTCAAGCCACACATGTTAAACCGCCGTGTCGGGGAGGCGCTGGCGGTTAACGCGGTTAACCACCTCCACCGCGTCCCAGGCAACCACTTGGGCAATTTGCTGACCATGCTACGTGACCAGGCACCTAGCATAGTAACTCTGGTGGAGCAAGAAGCTAGCCACAATGGACCTTACTTTCTAGGGCGTTTTCTTGAGGCCTTGCATTACTACTCCGCCATTTTCGACTCATTGGACGCCACTTTTCCGGCGGAATCCGCGCAGCGGGCGAAGGTGGAGCAGTACATATTCGCGCCGGAGATACGGAACATCGTGGCGTGCGAGGGGGCGGAGAGGTTCGAGAGGCACGAGAGGTTGGAGAAGTGGCGGAAGATAATGGAGGGGAAGGGGTTCAAGGGGGTGGCGCTGAGTCCGAACGCGGTGACTCAGTCGAAGATATTGTTGGGATTGTATTCGTGTGAGGGGTATAGGTTGACGGAGGATAAGGGTTGCTTGTTGCTTGGGTGGCAGGATAGGGCCATCATTGCTGCGTCTGCATGGCGGTGTTGA 2046 0.5318 MMNSLCGSSLSLKSENNNSRTKLQQPTSSNDSVLQSKKNNATQSSGDLDQTSLTPPSLNLPSLKFDLDGDVEVQSPDSSMWESFFADHIDGDFMISSPVRTPQAASSYNCNYNYAQGMQGQSLSGCSPPRFSSSQIGAFNSSSSLNKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEDYQTKVSSSDHNITSSSECFDLSSHQIPSSILDGLALHNSSRYHRGSVVDEESTVHGGGGGGGGSSQLSQESDIYHQMGSMASASLSQALQQERYQEKQQKQQAQQLQQQQRQHQQENLMVPIPIEIEQEQDSGLQLVHLLLACAEAVAKEEYMLARRYLHHLNRVVTPLGDSMQRVAACFTDSLSARLNSTLTPKPATPSKPLTPSNSLEVLKIYQIVYQACPYVKFAHFTANQAIFEAVEIEERVHVIDLDILQGYQWPAFMQALAARPAGAPFLRITGVGPLLDAVRETGRCLTELAHSLRIPFEFHAVGEQLEDLKPHMLNRRVGEALAVNAVNHLHRVPGNHLGNLLTMLRDQAPSIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPAESAQRAKVEQYIFAPEIRNIVACEGAERFERHERLEKWRKIMEGKGFKGVALSPNAVTQSKILLGLYSCEGYRLTEDKGCLLLGWQDRAIIAASAWRC* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0838 681 ProSiteProfiles GRAS family profile. 310 680 IPR005202 -
Gso19g0838 681 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 16 679 IPR005202 -
Gso19g0838 681 Pfam GRAS domain family 319 680 IPR005202 -
Gso19g0838 681 MobiDBLite consensus disorder prediction 1 59 - -
Gso19g0838 681 Coils Coil 269 299 - -
Gso19g0838 681 MobiDBLite consensus disorder prediction 231 251 - -
Gso19g0838 681 PANTHER GRAS FAMILY PROTEIN RAM1 16 679 - -
Gso19g0838 681 MobiDBLite consensus disorder prediction 268 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0838 Gso-Chr19 34007857 34011663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0838 307 679 GRAS Transcription Factor Family AT3G54220 45.333 2.01e-98 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso19g0838 GRAS 8.3e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0838 - - gmx:100805039 1266.52