Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0814 ATGGATTGGGATGGGAAAGAGTTTGCTTGGGATCCACGTGGGTTGGAGCTGCTGGCCAATGGTGAAGGCCAGAAGAGTGAAGCAGCTTCAGTGGATTTGAGGCTTGGTGGGGAAAAAATAGCCCCAGATGTTGCTAAAGACACAAAAGAATCGAAAACCGTGTCATCGCCATCTGGTTCGTCGAAAAGATCCCGCCTTCAGAATGGATCACAGAACATGTGTTGTTCTGTTGATGGATGCAATTCTGACCTCAGTGATTGCAGAGATTATCACAGGCGCCATAGGGTCTGCGAAAAGCACTCCAAAACCCCGGTTGTGTTGGTGGGGGGGAAACAACAGAGGTTCTGCCAACAATGCAGCAGGTTTCATTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGTAGGAAACGGCTTGACGGGCATAACAGGCGCCGGAGGAAACCTCAGCCACCGTCTCTTTTCATGGCTGCTGAGAAGTTCATGTACAATTACAAAGGACCTAGAATCCTACACTTTGGTAGCCCTGAGGCTTATGCCAACCCTATTATGAGAAACATGTGGCCTGCTGCTGCCAAAACTGGAGCTGAATCTGGTTATGATCCTCCTCGACTTTTATACAGAATCGACAAGCATAAGCAAGATAAGGGACATCCTCTTTGGCAAGAAAATGACCCTAAAGTAGGCAGTGGTGATGAAGCAATGCCGGGAACTCCCATTTGTCAGCCTATTCATGGCACCATTGCCCCATCAACGGGTGGAAAGAGCACCCGAAAGCTCTCTACAGATGCAAAACCTGGATCCTTTGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAGTCACAAAGTCCAGAGTTGAGTATGGCGCAATCTAGCATCACCTGTCCAATGCAATCTCCATCCGGATCTGTGCATTTTGATGCTGTGAATGAGTATTCATGCTCAGAAACGGAAAAAGATAAGCCCAGTGGTCAAGTATTGGTTTTTGATGCAAACACAACCAACCTTCATTACAACGGAATGCTGCAGATGGGGCTGGATGGATTGGTTGAAAATGAGGACCCACTGACACTTCCCTTCTTGTGGGAGTAG 1098 0.4772 MDWDGKEFAWDPRGLELLANGEGQKSEAASVDLRLGGEKIAPDVAKDTKESKTVSSPSGSSKRSRLQNGSQNMCCSVDGCNSDLSDCRDYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFMYNYKGPRILHFGSPEAYANPIMRNMWPAAAKTGAESGYDPPRLLYRIDKHKQDKGHPLWQENDPKVGSGDEAMPGTPICQPIHGTIAPSTGGKSTRKLSTDAKPGSFDSGCALYLLSTLQSQSPELSMAQSSITCPMQSPSGSVHFDAVNEYSCSETEKDKPSGQVLVFDANTTNLHYNGMLQMGLDGLVENEDPLTLPFLWE* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0814 365 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 11 365 - -
Gso19g0814 365 MobiDBLite consensus disorder prediction 51 70 - -
Gso19g0814 365 ProSiteProfiles Zinc finger SBP-type profile. 72 149 IPR004333 GO:0003677
Gso19g0814 365 MobiDBLite consensus disorder prediction 20 70 - -
Gso19g0814 365 Gene3D - 66 136 IPR036893 GO:0003677|GO:0005634
Gso19g0814 365 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 365 IPR044817 GO:0003677
Gso19g0814 365 Pfam SBP domain 75 148 IPR004333 GO:0003677
Gso19g0814 365 SUPERFAMILY SBT domain 73 154 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0814 Gso-Chr19 33187194 33190704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0814 75 173 SBP-box Gene Family AT5G50670 65.657 6.64e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso19g0814 SBP 1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0814 - - gmx:100798317 754.592