Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0783 ATGGGAGAGGATTCTGGGGAGTTTGGAGAAAGCACAAAAATCAATCACAAGATGGAAAATGTTGAAAGAGAAGAAGAAATAGACCCAGAAAGCAATCCACTGAATGAGCCACTGCTCAAGCGGAACCGGACACTGTCTTCCAACCCTCTTGCTCTGGTTGGAGAAAAAGTTTCCTACATAGAAAGCTTGGACTATGAGATAAATGAGAATGATCTATTCAAGCATGACTGGAGGAGCAGATCAAGAGTTCAAGTGTTGCAGTATATATTCTTGAAATGGTTACTAGCATTCCTTGTTGGACTTCTCACTGGTATTATAGCCACTCTCATCAATCTTGCAGTTGAGAATATTGCTGGGTATAAGCTTCTGGCTGTTCTTAAATACATCCACAAAGAAAGGTACTTGACGGGTTTCCTATATTTCACGGGCATTAATTTCGTTTTGACGTTTGTTGCTGCTATTCTCTGTGTGTGTTTTGCACCCACAGCAGCAGGACCTGGAATTCCTGAAATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTTTGGTGCTACAACATTGATTGTCAAGATAATTGGAAGCATTGGGGCTGTCTCTGCAGGCCTAGATTTGGGAAAAGAAGGACCGTTGGTGCATATAGGAAGCTGCATTGCTTCCTTACTAGGCCAGGGAGGCCCTGACAATTACAGGATCAAATGGCGCTGGCTTCGATATTTTAACAATGATCGTGACCGTCGGGATCTTATCACCTGTGGTTCATCTTCGGGAGTTTGTGCAGCTTTCCGGGCTCCAGTTGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTCCTGTGGAGAACTTTTTTCAGCACAGCTGTGGTGGTGGTGGTGCTCAGGGCCTTCATTGAAATCTGTCATACTGGGAAATGCGGCCTTTTTGGTGAAGGAGGATTGATCATGTTTGACGTAAGCAATGTCACAGTGAGGTACCATGTTATGGATATTGTCCTTGTTGTAGTCATTGGAATCATTGGCGGGGTATTGGGAAGCCTTTACAATCATGTACTACACAAGGTCCTCAGACTCTACAATCTCATCAATCATCTTGCAGTTGCACTATTCACATCAATGTGCGAATATGGTCTCCCATTCTTAGCAAAATGCACCCCATGTGATCCATCACTTCCAGAGTCAACCTGCCCCACCAATGGACGGTCTGGGAATTTCAAACAATTTAACTGCCCACCTGGCTACTACAATGATCTTGCTACTCTGCTGCTTACCACTAATGATGATGCCGTTCGAAATATATTCTCAACTAACACCCCTCAAGAATATCAACCCTTGTCCCTCGTAATTTTCTTTGTACTCTATTGCATATTAGGACTAATCACTTTTGGAATTGCTGTGCCATCTGGGCTCTTCCTCCCAATCATTCTTATGGGCTCAGGTTATGGCCGCCTTCTCGGCATCTACATGGGACCTCATACAAACATTGACCAAGGGCTGTTTGCAGTACTAGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGGATGACTGTATCCCTTTGTGTGATCTTCCTTGAACTCACCAACAATCTTCTCCTACTACCAATAACAATGATTGTCCTCCTAATAGCCAAAACTGTTGGAGACAGTTTCAACCCAAGCATCTATGAGATTATACTGCACTTGAAAGGCCTTCCTTTCATGGATGCAAATCCTGAGCCATGGATGAGAAATCTCACTGTGGGTGAGCTTGTTGATGTAAAGCCATCAGTGGTTACCCTCCATGGAGTAGAAAAGGTAGCCAAAATAGTAGATGTCTTGAAAAACACTACACATAATGCTTTCCCTGTTATGGACGATGGGGTAGTACCACCAGTAGTAGGACAGGCCAATGGGGGAACAGAACTGCATGGACTGATTCTAAGAGCACATCTCATCCAAGCACTAAAGAAGAAGTGGTTCCTTAAAGAAAGAAGGAGAACAGAGGAATGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGGAAGTATTGAAGAGGTGGCTGTGACCAGTGAGGAAATGGAGATGTTTGTTGATCTACATCCTCTTACCAATACAACTCCCTTTACAGTGCTAGAGAGCATGTCAGTAGCAAAAGCAATGATCCTCTTCAGGCAAGTTGGACTTCGCCATCTGCTTGTAGTACCCAAGTATCAAGCATCTGGGGTATCCCCAGTAATTGGGATCTTGACCAGGCAAGATCTTCTTGCCCATAACATTCTGACAGTCTTTCCTCACCTGGCAATATCTAAGGGTAGAGAAAAGAGGAATTGA 2343 0.4434 MGEDSGEFGESTKINHKMENVEREEEIDPESNPLNEPLLKRNRTLSSNPLALVGEKVSYIESLDYEINENDLFKHDWRSRSRVQVLQYIFLKWLLAFLVGLLTGIIATLINLAVENIAGYKLLAVLKYIHKERYLTGFLYFTGINFVLTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICHTGKCGLFGEGGLIMFDVSNVTVRYHVMDIVLVVVIGIIGGVLGSLYNHVLHKVLRLYNLINHLAVALFTSMCEYGLPFLAKCTPCDPSLPESTCPTNGRSGNFKQFNCPPGYYNDLATLLLTTNDDAVRNIFSTNTPQEYQPLSLVIFFVLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIYMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPSVVTLHGVEKVAKIVDVLKNTTHNAFPVMDDGVVPPVVGQANGGTELHGLILRAHLIQALKKKWFLKERRRTEEWEVREKFTWVELAEREGSIEEVAVTSEEMEMFVDLHPLTNTTPFTVLESMSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNILTVFPHLAISKGREKRN* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0783 780 CDD ClC_6_like 61 573 - -
Gso19g0783 780 Pfam Voltage gated chloride channel 149 553 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso19g0783 780 Pfam CBS domain 709 759 IPR000644 -
Gso19g0783 780 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 8 775 - -
Gso19g0783 780 SUPERFAMILY CBS-domain pair 577 760 IPR046342 -
Gso19g0783 780 ProSiteProfiles CBS domain profile. 707 772 IPR000644 -
Gso19g0783 780 PANTHER CHLORIDE CHANNEL PROTEIN 8 775 - -
Gso19g0783 780 SMART cbs_1 710 763 IPR000644 -
Gso19g0783 780 SMART cbs_1 595 655 IPR000644 -
Gso19g0783 780 Gene3D - 581 762 IPR046342 -
Gso19g0783 780 PRINTS Plant CLC chloride channel signature 66 74 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso19g0783 780 PRINTS Plant CLC chloride channel signature 277 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso19g0783 780 PRINTS Plant CLC chloride channel signature 291 301 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso19g0783 780 PRINTS Plant CLC chloride channel signature 309 316 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso19g0783 780 PRINTS Plant CLC chloride channel signature 424 440 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso19g0783 780 SUPERFAMILY Clc chloride channel 70 575 IPR014743 -
Gso19g0783 780 MobiDBLite consensus disorder prediction 9 30 - -
Gso19g0783 780 CDD CBS_pair_voltage-gated_CLC_euk_bac 593 761 - -
Gso19g0783 780 Gene3D Clc chloride channel 83 575 - -
Gso19g0783 780 PRINTS Chloride channel signature 161 178 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso19g0783 780 PRINTS Chloride channel signature 192 211 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso19g0783 780 PRINTS Chloride channel signature 256 275 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso19g0783 780 PRINTS Chloride channel signature 472 492 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso19g0783 780 PRINTS Chloride channel signature 504 520 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso19g0783 780 PRINTS Chloride channel signature 522 541 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso19g0783 780 PRINTS Chloride channel signature 560 574 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso19g0783 780 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0783 Gso-Chr19 31906644 31911602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0783 3 775 Ion Channels AT3G27170 78.416 0.0 1231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0783 K05016 - gmx:100788620 1487.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0783 19 31906644 31911602 Gso16g0475 16 5606464 5612042 GST
Gso19g0783 19 31906644 31911602 Gso5g0669 5 10002421 10007490 PCT
Gso5g0669 5 10002421 10007490 Gso19g0783 19 31906644 31911602 PCT