Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0778 ATGCCGGAAGAAACGACGTCGATCGACTACGTGATGGAGGCGGCATCTGGGCCCCACTTCTCCGGCCTGAGACTTGACGGCCGTATGCCGTCCTCCGCCACCGCCGCCGCCGCGTCCTCCTCTGCCGATTCTACCCTAACCCCCGATTTCCTCCCCAATCAACCCTTCGTCATAGGTGTTTCGGGAGGTACTGCCTCGGGAAAAACCACCGTCTGCGACATGATAATTCAGCAACTTCACGATCACCGCGTTGTTCTCGTCAATCAGGACTCGTTTTATCGCGGGTTGAATCCTGAAGAGTTGGAACGCGTTCACGAGTACAATTTCGACCACCCTGATGCTTTTGACACGGAGCAGTTGTTAGAGTGCACGATGAAGCTTATCAGTGGCCAGGGCGTGCATGTTCCCATTTACGACTTCAAGAAGCACCAACGCTCTTCCGATAGTTTTCGCCAGGTGAATGCTTCTGATGTGATTATATTGGAGGGGATTCTTGTGTTCCACGATCAGCGCGTGCGGGATCTGATGAACATGAAGATCTTTGTTGACACAGATGCTGATGTGAGACTTGCTCGTAGAATTAGGCGTGACACAATGGAGAGAGGCAGGGATATAAACTCTGTTCTTGAACAGTATGCAAAATTTGTTAAGCCTGCATTTGATGATTTTGTTCTACCATCAAAAAAGTACGCTGACGTGATCATTCCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATTGTGCAACATATCCGTACAAAGCTCGGCCAACATGATCTATGCAAAATATATCCAAATGCCTATGTTATTCAGTCTACATTCCAGATCAGGGGAATGCATACGTTGATTCGTGACCGAGACATATCAAAGCATGATTTCGTATTTTATTCAGATCGACTTATACGCCTGGTTGTTGAGCATGGTCTAGGTCATCTGCCTTTCACCGAAAAGCAAGTGGTTACTCCCACAGGATCTGTTTATACCGGTGTTGATTTCTGCAAAAAATTGTGTGGTGTTTCAATTGTTCGAAGTGGTGAGAGCATGGAAAATGCACTTCGTGCATGTTGCAAAGGTATTAAAATTGGTAAAATTTTGATTCACCGGGATGGAGACAATGGAAAACAGCTTATATATGAAAAGCTCCCCAAGGATATTTCAGAACGGCATGTCTTGCTTCTTGACCCTGTCCTGGCCACAGGTAACTCTGCCAACCAAGCAATTGAATTACTCATTCAGAAAGGAGTACCAGAAAGTCACATTATATTCTTGAATCTCATTTCTGCTCCTGAGGGAATCCACTGCGTGTGTAAAAGGTTTCCATCATTGAAGATTGTCACGTCTGAGATTGACATTGAAATAAACGAAGAGTATCGTGTTATCCCAGGATTGGGGGAATTTGGTGATCGATACTTTGGTACCGATGATTGA 1431 0.4563 MPEETTSIDYVMEAASGPHFSGLRLDGRMPSSATAAAASSSADSTLTPDFLPNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLNPEELERVHEYNFDHPDAFDTEQLLECTMKLISGQGVHVPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQRVRDLMNMKIFVDTDADVRLARRIRRDTMERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNAYVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDIEINEEYRVIPGLGEFGDRYFGTDD* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0778 476 Gene3D - 259 474 IPR029057 -
Gso19g0778 476 CDD UMPK 57 255 IPR000764 -
Gso19g0778 476 SUPERFAMILY PRTase-like 258 475 IPR029057 -
Gso19g0778 476 Pfam Phosphoribulokinase / Uridine kinase family 57 243 IPR006083 GO:0005524|GO:0016301
Gso19g0778 476 PRINTS Uridine kinase signature 55 72 - -
Gso19g0778 476 PRINTS Uridine kinase signature 85 96 - -
Gso19g0778 476 PRINTS Uridine kinase signature 130 145 - -
Gso19g0778 476 PRINTS Uridine kinase signature 187 197 - -
Gso19g0778 476 PRINTS Uridine kinase signature 201 212 - -
Gso19g0778 476 PRINTS Uridine kinase signature 223 236 - -
Gso19g0778 476 PANTHER URIDINE KINASE 39 473 - -
Gso19g0778 476 CDD PRTases_typeI 332 447 IPR000836 -
Gso19g0778 476 Pfam Uracil phosphoribosyltransferase 273 474 - -
Gso19g0778 476 TIGRFAM udk: uridine kinase 56 255 IPR000764 -
Gso19g0778 476 Gene3D - 52 258 IPR027417 -
Gso19g0778 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 248 IPR027417 -
Gso19g0778 476 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 39 473 IPR029930 GO:0004849|GO:0044206
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0778 Gso-Chr19 31694660 31702372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0778 1 476 PRT Gene Family AT5G40870 85.331 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0778 K00876 - gmx:100786137 939.873