Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0770 ATGGGCACAGTAGAAATGATCATTGCATTTCACATGAAGGCTTTGGTCTTTTTCCTTTGGCTGTTTGTCCCCTCATTGGGCAAAGACTTGCTAAGCTGTGAGACAACTTCACCTGATGCCTCTGGCTACCATTGCATTGAAAATGTGTCACAGAACCAATGTGAGACATTTGCACTCTTTTTAACAAACTCTTACTACTCCTCTCTCTCCAACCTCACCTCTTATTTGGGACTAAACAAGTTTGTCATAGCACAAGCAAATGGTTTCTCTGCAGACACTGAGTTCCTCTCCCAGGATCAGCCTCTACTGGTACCTATTCATTGTAAATGCATAGGTGGCTTCTCTCAGGCTGAGTTAACCAAAACTACCGTCAAAGGAGAGAGCTTCTATGGCATTGCTCAATCACTAGAGGGATTGACAACTTGCAAGGCTATTAGGGACAACAACCCTGGTGTGTCACCTTGGAATCTTGATGACAAAGTGAGATTGGTTGTTCCATTGAGATGTTCCTGCCCATTTTCATCTCAAGTTAGACCACAACCAAAGCTTCTGCTTTCTTATCCAGTAAGTGAAGGTGATACTATTTCCAATTTGGCCTCAAAGTTCAATATTACTAAAGAAGCTATTGTTTATGCTAATAACATATCATCACAAGGCCTTAGGACTAGAAGTAGTCTTGCACCCTTTACCTCTATTCTCATTCCACTTAATGGTAAGCCTATCATTGGTCCTTTGGTTAAGCCCAAGGAACCCGATTCTGGCAATCAAACAACCAGCATCCCAGTGACAAGTCCACACAAGAAATCACCAATGTGGAAGACTGAATTGTGCATTGGCCTAGCTGGGGTTGCACTTGGAGTCTGCATTGCTTTTGCTGCCGCCTTTTTCTTCATCAGATTGAAACACAAGAAGGAGGAAGAGAATTCATGCAAAGAAGGGGACTTGGAGCTGCAATATCTGAACCAAAGTGTGAGAACCACCTCAACTAGTGACAAGAAAGTTTCATTTGAAGGGTCTCAGGATGCTCTTGATGTGAAAATCGTGGACGCCCTGCCGCGGAAGTTGTTGCTGGATACATACACCATTGAAGATGTGAGAAAAGCAACTGAAGATTTCAGCTCAAGCAATCACATTGAAGGGTCAGTGTATCACGGTCGTCTGAACGGGAAGAACATGGCAATCAAAGGGACAAAGGCAGAAGTAGTGTCAAAGATAGATCTTGGCCTTTTCCATGATGCACTTCACCATCATCCCAACATACTCAGGCTTCTTGGAACTAGCATGTTAGAGGGGGAGCAGCAAGAAGAGTCATTTTTAGTTTTTGAGTATGCCAAAAATGGTTCATTGAAAGATTGGCTCCATGGTGGATTAGCCATCAAGAACCAATTCATTGCTTCCTGCTACTGTTTCCTGACTTGGAGCCAAAGGCTCAGGATCTGCCTTGATGTGGCCGGTGCCTTGCAGTATATGCACCATGTTATGAATCCAAGCTATGTGCATAGAAATGTAAAGAGCAGGAACATCTTTTTGGATGAAGAATTTGGTGCCAAGATAGGGAATTTTGGTATGGCAGGTTGTGTTGAGAATGACACTGAGGACCCTCAATTCTATTCCACCAACCCTGCCTCTTGGAGTCTTGGTTATTTGGCACCTGAATATGTGCACCAAGGTGTAATTTCCCCAAGTGTTGATATCTTTGCTTATGGGGTGGTTTTGTTGGAAGTTTTGTCCGGTCAAACACCTATAAGCAGGCCCAATGAGAAGGGAGAAGGAAGCATTTGGCTTACAGATAAAATCAGGTCCATTTTGGTGTCAGAAAATGTGAATGAACTAAGGGATTGGATAGACAGTGCATTGGGGGAGAACTATTCATTTGATGCAGCTGTGACACTTGCCAACATTGCAAGAGCTTGTGTGGAGGAAGATTCCTCTTTGAGACCAAGTGCAAGGGAAATTGTTGAGAAGCTATCAAGATTGGTGGAGGAATTACCACAAGGGGAAAATGACATGTTAATGTGTGAAAGCTCTAGCAAACCTCTGGTGAAGGCAGTGGAAAACAATGTTGAATAA 2070 0.4329 MGTVEMIIAFHMKALVFFLWLFVPSLGKDLLSCETTSPDASGYHCIENVSQNQCETFALFLTNSYYSSLSNLTSYLGLNKFVIAQANGFSADTEFLSQDQPLLVPIHCKCIGGFSQAELTKTTVKGESFYGIAQSLEGLTTCKAIRDNNPGVSPWNLDDKVRLVVPLRCSCPFSSQVRPQPKLLLSYPVSEGDTISNLASKFNITKEAIVYANNISSQGLRTRSSLAPFTSILIPLNGKPIIGPLVKPKEPDSGNQTTSIPVTSPHKKSPMWKTELCIGLAGVALGVCIAFAAAFFFIRLKHKKEEENSCKEGDLELQYLNQSVRTTSTSDKKVSFEGSQDALDVKIVDALPRKLLLDTYTIEDVRKATEDFSSSNHIEGSVYHGRLNGKNMAIKGTKAEVVSKIDLGLFHDALHHHPNILRLLGTSMLEGEQQEESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWSQRLRICLDVAGALQYMHHVMNPSYVHRNVKSRNIFLDEEFGAKIGNFGMAGCVENDTEDPQFYSTNPASWSLGYLAPEYVHQGVISPSVDIFAYGVVLLEVLSGQTPISRPNEKGEGSIWLTDKIRSILVSENVNELRDWIDSALGENYSFDAAVTLANIARACVEEDSSLRPSAREIVEKLSRLVEELPQGENDMLMCESSSKPLVKAVENNVE* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0770 689 MobiDBLite consensus disorder prediction 245 266 - -
Gso19g0770 689 SUPERFAMILY Protein kinase-like (PK-like) 356 656 IPR011009 -
Gso19g0770 689 Pfam LysM domain 187 221 IPR018392 -
Gso19g0770 689 Gene3D LysM domain 173 240 IPR036779 -
Gso19g0770 689 MobiDBLite consensus disorder prediction 251 265 - -
Gso19g0770 689 Pfam Protein kinase domain 380 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0770 689 CDD LysM 186 217 IPR018392 -
Gso19g0770 689 Gene3D Phosphorylase Kinase; domain 1 350 443 - -
Gso19g0770 689 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 7 685 - -
Gso19g0770 689 PANTHER PROTEIN LYK2 7 685 - -
Gso19g0770 689 ProSiteProfiles Protein kinase domain profile. 345 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0770 689 ProSiteProfiles LysM domain profile. 185 234 IPR018392 -
Gso19g0770 689 Gene3D Transferase(Phosphotransferase) domain 1 444 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0770 Gso-Chr19 31399220 31401758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0770 42 682 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.862 5.91e-150 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gso19g0770 Pkinase 1.7e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0770 - - gmx:100816082 1360.13