Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0717 ATGGAGAACAAAAGAATGGTGACGAATGAAGAACAGAGGCGCAGTCCCAGAAACCAGAAGATCCTCCCATTAGCAGATTACAATGGCCAAAACTTGGCAACCCTTTTCAGCCCAAGGTTCAAATCTGCGGCTGCTATGGCTGGTTGGGATGAAGAGGCACTGTTGTTGGCCAGCCTCTTCGTTGAAGACACGCCGGATAGAGATCCCAAGCACAAGAAGCGCTACGTTTGGCACTCCAAAACCCCACCAAACTCATCAAGGAAACGTAGAGCTCTGAGGAGTCCACAAGCACCAATCCCTGTAGTTCTTGATCTTGATGCAGAAGAAACTCCCAGAAAAGATAGTGGGAGAAAGAATAAAGAAATGAAAGTTTGTGTTGATAATGAGGGAAAGAAAGCTTGTGTTGAGAATGAGGGAAGCAGAGTGGGAGGAGATGGGAATGAATCAAAAGAGAAGAACTCGGCTGACGCTTCTTCTAGTTCTGTTCTTCCCTGCATTGATAAACTAAGGGATGAGCTTTCCTGTGCTATTTGTTTGGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTCTGTAGAAAATGTCTAAGATCTGCTGCAGACAAGTGTGGCAAAAAGTGCCCAAAATGCAGGCAGCTAATAAGCAATGGCCGACCATGCACTGTGAACACAGTTCTCTGGAACACAATCCAGCTTCTGTTTCCACAAGAAGTTGAAGCAAGAAAAGAAGCCAGTGCCTTGAATAGTCTCCAACAAGCTCAAAATCTGAGTCCAGAATCAGCATTTTTTGCTAATCTAAGGAATGACAGACGACAGCCTTTTAGGGGGGCATCAACAACAACATCATCAACACAGCAGGATGAGGATGCTGCATTGGCTAGAATGTTGCAGAGACAAATTGATGAACAAAGAAGCCCGGGAACAACTCGAACTCGGTTTGCAAGATTGAGGGCAAGAAGAGGAGGGGTTTCTACTAGCCAACATGAGGATGCAGCTTTGGCTCTAAGGATGAGGAGAGAAGAGTTCATGCAAACTTATAGAGGGAGCAGCCAGTCTAGCAGGCTACCCTCATCATTATTAGCTAGAGAAAAATTGAGGGCTATGGTATCTAGAGCCATGAACAGAAGAGAAGATCTTAGACAAGGGTGA 1158 0.4551 MENKRMVTNEEQRRSPRNQKILPLADYNGQNLATLFSPRFKSAAAMAGWDEEALLLASLFVEDTPDRDPKHKKRYVWHSKTPPNSSRKRRALRSPQAPIPVVLDLDAEETPRKDSGRKNKEMKVCVDNEGKKACVENEGSRVGGDGNESKEKNSADASSSSVLPCIDKLRDELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRPCTVNTVLWNTIQLLFPQEVEARKEASALNSLQQAQNLSPESAFFANLRNDRRQPFRGASTTTSSTQQDEDAALARMLQRQIDEQRSPGTTRTRFARLRARRGGVSTSQHEDAALALRMRREEFMQTYRGSSQSSRLPSSLLAREKLRAMVSRAMNRREDLRQG* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0717 385 MobiDBLite consensus disorder prediction 64 122 - -
Gso19g0717 385 ProSiteProfiles Zinc finger RING-type profile. 175 214 IPR001841 -
Gso19g0717 385 MobiDBLite consensus disorder prediction 136 152 - -
Gso19g0717 385 MobiDBLite consensus disorder prediction 73 87 - -
Gso19g0717 385 Pfam Zinc finger, C3HC4 type (RING finger) 175 213 IPR018957 GO:0046872
Gso19g0717 385 PANTHER - 22 258 - -
Gso19g0717 385 PANTHER - 321 377 - -
Gso19g0717 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 244 IPR013083 -
Gso19g0717 385 MobiDBLite consensus disorder prediction 136 158 - -
Gso19g0717 385 SMART ring_2 175 213 IPR001841 -
Gso19g0717 385 Coils Coil 365 385 - -
Gso19g0717 385 MobiDBLite consensus disorder prediction 106 122 - -
Gso19g0717 385 ProSitePatterns Zinc finger RING-type signature. 190 199 IPR017907 -
Gso19g0717 385 PANTHER UNCHARACTERIZED 321 377 - -
Gso19g0717 385 PANTHER UNCHARACTERIZED 22 258 - -
Gso19g0717 385 MobiDBLite consensus disorder prediction 1 22 - -
Gso19g0717 385 MobiDBLite consensus disorder prediction 1 17 - -
Gso19g0717 385 SUPERFAMILY RING/U-box 167 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0717 Gso-Chr19 29657910 29660605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0717 167 265 C2H2 Transcription Factor Family AT5G39550 33.333 1.05e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0717 - - gmx:100810041 744.577