Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0710 ATGGGTTCCCCCTCTTGTCCTCCTAATAAAGGCTACTCTCCAGTCGATGTGCGAAGTCCAGGAGCTCACATTGGCCACATCCACCCTAACATGCCTAAGTTCCAAATTTTGAAGTTGCTTATTACAATATTTGCTGGTATCCCTCTAGTTCAGCAGAGGTTGATATTTGCTGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAATATTCTGAACGAGTTCACTCTGCATTTGGTGTTGAGGCTTCGTGGAGGTATGCAAATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTGGAAAGCTCTGATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATCCCTCCAGATCAGCAAAGGCTCATTTTTGCTGGGAGGCAATTAGAAGATGGTCGTACCTTGGCAGATTACAATATTCAGAAGGAATCCACCATGCATCTTCCACTTCGCCTTCATGGTGGTTGGTTGCTAAGCGAGTCCTCTTAA 513 0.4464 MGSPSCPPNKGYSPVDVRSPGAHIGHIHPNMPKFQILKLLITIFAGIPLVQQRLIFAGKQLEDGRTLADYNILNEFTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLADYNIQKESTMHLPLRLHGGWLLSESS* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0710 170 SUPERFAMILY Ubiquitin-like 35 87 IPR029071 -
Gso19g0710 170 ProSitePatterns Ubiquitin domain signature. 114 139 IPR019954 -
Gso19g0710 170 Gene3D - 88 168 - -
Gso19g0710 170 Gene3D - 33 87 - -
Gso19g0710 170 PRINTS Ubiquitin signature 98 118 IPR019956 -
Gso19g0710 170 PRINTS Ubiquitin signature 119 139 IPR019956 -
Gso19g0710 170 PRINTS Ubiquitin signature 140 161 IPR019956 -
Gso19g0710 170 ProSiteProfiles Ubiquitin domain profile. 37 87 IPR000626 GO:0005515
Gso19g0710 170 PANTHER - 46 163 - -
Gso19g0710 170 SMART ubq_7 13 83 IPR000626 GO:0005515
Gso19g0710 170 SMART ubq_7 88 159 IPR000626 GO:0005515
Gso19g0710 170 ProSiteProfiles Ubiquitin domain profile. 88 163 IPR000626 GO:0005515
Gso19g0710 170 SUPERFAMILY Ubiquitin-like 86 164 IPR029071 -
Gso19g0710 170 CDD Ubl_ubiquitin 88 163 - -
Gso19g0710 170 Pfam Ubiquitin family 37 85 IPR000626 GO:0005515
Gso19g0710 170 Pfam Ubiquitin family 90 159 IPR000626 GO:0005515
Gso19g0710 170 PANTHER UBIQUITIN 46 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0710 Gso-Chr19 29308079 29313186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0710 46 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 86.047 6.97e-19 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0710 - K08770 gsj:114398702 343.969