Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0707 ATGGTGTTCATATTTCCAACTCTTCTGTCTATGAAACTCAAACCACTTTTGCTGCTTCATGTGATGTACTTTTGTTCATTTGCAATGGCTGCTTCTCCTATTTCTTCTGAGATTGCTTTAGAAGCAAATGCTTTGTTGAAGTGGAAAGCCAGCCTAGACAACCAAAGTCAAGCTTCTCTCTCTTCATGGATTGGCAATAATCCTTGCAATTGGCTTGGAATTACATGTGATGTGTCCAATTCTGTTTCCAACATAAATCTTACACGTGTTGGGTTAAGAGGTACGCTTCAAAGTCTTAATTTCTCATTACTTCCAAACATCCTCATACTGAATATAAGCTACAACTCCTTGTCTGGAAGTATTCCTCCTCAAATTGATGCCTTGTCCAATCTCAACACTCTTGACTTGTCCACTAATAAACTCTCTGGTAGCATTCCCAACACCATTGGTAATTTGTCCAAACTACAATATCTTAATCTTAGTGCCAATGGTCTATCTGGGTCTATTCCTAATGAAGTGGGAAATCTCAATTCTCTTCTCACATTCGATATATTTTCCAACAATCTCTCTGGACCAATTCCACCTTCATTAGGTAACTTACCCCATTTGCAATCCATTCATATTTTTGAAAATCAACTCTCTGGGTCCATTCCTTCCACTCTAGGAAATTTGTCCAAGCTCACTATGTTATCTTTATCATCAAACAAACTCACTGGGTCCATTCCTCCCTCTATTGGAAATTTAACAAATGCTAAAGTGATATGTTTTATTGGAAATGATCTTAGTGGTGAGATTCCAATAGAATTGGAGAAGCTTACTGGTTTGGAATGTTTGCAGCTAGCTGATAATAATTTTATAGGCCAAATACCTCAAAATGTTTGCCTCGGTGGAAACTTGAAATACTTTACTGCGGGGAATAACAATTTCACTGGCCAAATTCCTGAGAGTTTGAGGAAGTGCTACAGCCTTAAAAGACTCAGGCTTCAGCAAAACCTTCTATCCGGGGATATCACAGATTTTTTTGATGTACTTCCAAACTTGAACTACATCGATTTGAGTGAAAATAATTTTCATGGTCACATTTCACCTAAGTGGGGAAAGTTCCATAGCCTCACAAGCCTCATGATCTCCAACAATAATTTGTCAGGTGTTATTCCACCAGAACTAGGTGGAGCGTTCAACTTACGCGTACTTCACCTATCCTCAAACCATCTTACAGGAACCATTCCTCAAGAATTATGCAACATGACCTTCTTGTTTGATCTCTTGATCAGCAACAATAATCTTTCAGGAAATATCCCTATAGAAATATCATCGCTGCAAGAACTTAAATTTTTGGAGCTTGGCTCAAATGATTTGACTGACTCAATCCCGGGACAACTTGGAGATTTGCTCAATTTATTGTCCATGGATCTGAGCCAGAATAGATTTGAGGGAAATATTCCTTCAGATATTGGCAATCTGAAATATCTTACAAGTCTTGATCTCAGTGGAAATTTGCTGAGTGGAACAATACCACCCACGCTTGGAGGAATAAAAGGCTTAGAAAGATTGAATCTCTCACACAATAGTCTTTCAGGTGGTCTCTCTAGCTTGGATGATATGATAAGCTTGACATCTTTTGATATATCATACAATCAGTTTGAGGGTCCACTTCCAAACATTCTAGCCCTCCAAAATACTTCAATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGCAATGTCACTGGCTTGGAGCCTTGCACAACATCAACTGCGAAGAAATCTCATAGTCATATGACAAAGAAAGTCTTAATATCAGTTTTACCCCTTAGTTTGGTCATTCTAATGCTTGCATTATCTGTTTTCGGAGTCTGGTATCATTTACGCCAAAATTCAAAGAAAAAACAAGACCAGGCTACAGATTTACTATCTCCAAGGAGTCCAAACTTATTATTACCAACGTGGAGTTTGGGTGGCAAAATGATGTTCGAGAATATTATTGAAGCCACAGAATATTTTGACGACAAATATCTTATTGGGGTTGGAGGGCAAGGACGTGTTTACAAAGCCATGTTGCCTACAGGTGAAGTCGTAGCTGTGAAGAAACTCCATTCAATTCCAAATGGAGAAATGCTCAATCAGAAAGCTTTCACAAGTGAGATCCAAGCTTTGACAGAAATCCGACATCGTAACATTGTAAAGTTACATGGGTTTTGTTCACATTCACAATACTCATTTTTGGTGTGTGAGTTTCTGGAGATGGGCGACGTCAAGAAGATTTTGAAGGATGATGAACAAGCAATTGCGTTTGATTGGAATAAAAGGGTGGATGTTGTTAAGGGTGTAGCAAATGCTTTATGCTATATGCATCATGATTGCTCACCTCCAATCGTTCATCGTGATATATCAAGCAAGAATGTTCTTTTGGATTCCGATTATGTAGCTCATGTCTCAGACTTCGGAACAGCCAAGTTTCTTAATCCAGATTCATCCAATTGGACCTCCTTTGCAGGAACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGCAAATGAGAAATGTGACGTGTATAGCTTTGGGGTCTTAGCATTGGAAATATTGTTTGGAGAGCACCCTGGTGATGTTACATCTTCTCTATTGCTATCATCTTCATCGATTGGTGCTACCTCAACACTAGATCATATGTCATTGATGGTTAAGTTGGATGAACGTCTCCCTCATCCAACTAGCCCTATTGACAAGGAGGTGATATCGATTGTGAAGATAGCAATTGCCTGCTTGACTGAAAGCCCGCGATCTCGCCCTACCATGGAGCAGGTTGCCAAGGAGCTTGCAATGTCTTCGAGGTCATCTTCAATGTCACCACGGACACACACACACCTGAAAGACTGA 2886 0.3947 MVFIFPTLLSMKLKPLLLLHVMYFCSFAMAASPISSEIALEANALLKWKASLDNQSQASLSSWIGNNPCNWLGITCDVSNSVSNINLTRVGLRGTLQSLNFSLLPNILILNISYNSLSGSIPPQIDALSNLNTLDLSTNKLSGSIPNTIGNLSKLQYLNLSANGLSGSIPNEVGNLNSLLTFDIFSNNLSGPIPPSLGNLPHLQSIHIFENQLSGSIPSTLGNLSKLTMLSLSSNKLTGSIPPSIGNLTNAKVICFIGNDLSGEIPIELEKLTGLECLQLADNNFIGQIPQNVCLGGNLKYFTAGNNNFTGQIPESLRKCYSLKRLRLQQNLLSGDITDFFDVLPNLNYIDLSENNFHGHISPKWGKFHSLTSLMISNNNLSGVIPPELGGAFNLRVLHLSSNHLTGTIPQELCNMTFLFDLLISNNNLSGNIPIEISSLQELKFLELGSNDLTDSIPGQLGDLLNLLSMDLSQNRFEGNIPSDIGNLKYLTSLDLSGNLLSGTIPPTLGGIKGLERLNLSHNSLSGGLSSLDDMISLTSFDISYNQFEGPLPNILALQNTSIEALRNNKGLCGNVTGLEPCTTSTAKKSHSHMTKKVLISVLPLSLVILMLALSVFGVWYHLRQNSKKKQDQATDLLSPRSPNLLLPTWSLGGKMMFENIIEATEYFDDKYLIGVGGQGRVYKAMLPTGEVVAVKKLHSIPNGEMLNQKAFTSEIQALTEIRHRNIVKLHGFCSHSQYSFLVCEFLEMGDVKKILKDDEQAIAFDWNKRVDVVKGVANALCYMHHDCSPPIVHRDISSKNVLLDSDYVAHVSDFGTAKFLNPDSSNWTSFAGTFGYAAPELAYTMEANEKCDVYSFGVLALEILFGEHPGDVTSSLLLSSSSIGATSTLDHMSLMVKLDERLPHPTSPIDKEVISIVKIAIACLTESPRSRPTMEQVAKELAMSSRSSSMSPRTHTHLKD* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0707 961 SMART LRR_typ_2 128 151 IPR003591 -
Gso19g0707 961 SMART LRR_typ_2 152 176 IPR003591 -
Gso19g0707 961 SMART LRR_typ_2 368 392 IPR003591 -
Gso19g0707 961 SMART LRR_typ_2 200 223 IPR003591 -
Gso19g0707 961 SMART LRR_typ_2 488 512 IPR003591 -
Gso19g0707 961 SMART LRR_typ_2 394 416 IPR003591 -
Gso19g0707 961 SMART LRR_typ_2 440 464 IPR003591 -
Gso19g0707 961 SMART LRR_typ_2 224 248 IPR003591 -
Gso19g0707 961 SMART LRR_typ_2 272 296 IPR003591 -
Gso19g0707 961 Gene3D Transferase(Phosphotransferase) domain 1 747 958 - -
Gso19g0707 961 PRINTS Leucine-rich repeat signature 131 144 - -
Gso19g0707 961 PRINTS Leucine-rich repeat signature 224 237 - -
Gso19g0707 961 Pfam Leucine rich repeat 490 548 IPR001611 GO:0005515
Gso19g0707 961 Pfam Leucine rich repeat 110 165 IPR001611 GO:0005515
Gso19g0707 961 Pfam Protein kinase domain 670 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0707 961 Pfam Leucine rich repeat N-terminal domain 41 77 IPR013210 -
Gso19g0707 961 SUPERFAMILY L domain-like 318 574 - -
Gso19g0707 961 ProSiteProfiles Protein kinase domain profile. 668 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0707 961 SUPERFAMILY Protein kinase-like (PK-like) 648 942 IPR011009 -
Gso19g0707 961 ProSitePatterns Tyrosine protein kinases specific active-site signature. 792 804 IPR008266 GO:0004672|GO:0006468
Gso19g0707 961 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 149 948 - -
Gso19g0707 961 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 10 166 - -
Gso19g0707 961 Gene3D Phosphorylase Kinase; domain 1 639 746 - -
Gso19g0707 961 SMART LRR_sd22_2 128 154 - -
Gso19g0707 961 SMART LRR_sd22_2 224 250 - -
Gso19g0707 961 SMART LRR_sd22_2 488 514 - -
Gso19g0707 961 SUPERFAMILY L domain-like 60 364 - -
Gso19g0707 961 Pfam Leucine Rich Repeat 394 415 IPR001611 GO:0005515
Gso19g0707 961 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 149 948 - -
Gso19g0707 961 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 10 166 - -
Gso19g0707 961 Gene3D Ribonuclease Inhibitor 296 591 IPR032675 -
Gso19g0707 961 Gene3D Ribonuclease Inhibitor 190 295 IPR032675 -
Gso19g0707 961 Gene3D Ribonuclease Inhibitor 37 189 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0707 Gso-Chr19 29267886 29271193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0707 5 840 Receptor kinase-like Gene Family AT4G08850 41.307 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso19g0707 Pkinase 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0707 - - gmx:100809509 1796.17