Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0693 ATGTGCAACAAGAACAGTCCTTCTTCTTCGGACATTCAAACAACCTCTATTATGAAGAGGACGCGGAAGCCGAATAGAAGGTATTATCATAACTCTTCTTCATCCTCTTCTTCTTCTTCCTCGACGACGTCGTTTAAGCTGCACCGGCGTGGGAACAGAACGAAAACGCGGAAGCCCAAGTTCGTGAGCCTGAAGCTTCAGTTATCCGAGCCTAAGAAGAAGATGGCATCCACCAAGCCCAAGCCCAAGCCCAAGGCTGAACAACTACAACAACAGCAGCAGTTACAGCAACAACAACAACAACAACAGCCGCAGCTCAATCTCTTCCCTCTCCATCCGGACCACCACGACATGCACGAGGAGCAGAACATGGCGCTTCTCTTCAGCTCCGACGGCGGGGCAACCCTCAACGGGCTACTGGAGGAGGGTTCGACGACGACGACAACGACGTCGGTGCTGACGTGTCCGGCGGAGGATACCGGGAACTGGCTGGTTCGGAAGGCGATGCGGCGGAGGGAGAGCGAGGAGGGGAGTGAAGAACGGTGGGTGTGCTACTCGGAGGTGGTGGAGGAGAAGAAGGAGGCGATGGAGGAGGTCACGAGTTATTCCGTCAAGGGGGAAACGAAAACGACGTCGTTCGGATTTGGGTTGTTGTCGTTGAAGCTGGATCACCAGGGGATATTGAATGCTTGGTCTGATAAAGGCTCTCTCTACGTCGCGGGGGAGGAGGAGGGGGCCCTACAGACTGTCCCTGACATATTCAATGGTTTCCTCTTTCATAATGCCGTCGCCCCCCATGTTGCATGGGACGGTTGGGGGAGTGGTGGTGTTGTTGGGAACGCATGGAGTGTTCATGAAGAGTGTGGGGCTAACAAGGCGAATGTGAAAGAAGAAACGAGTTGGAAGTTGGCGCAGAGAGAGGCAAGTGTGCAGAGGTACAAGGAGAAGAGGCAAAGCAGGCTCTTCTCTAAGAGGATCCGTTATGAAGTTCGCAAGCTGAATGCTGAGAAACGGCCCAGGATGAAGGGACGATTCGTGAAGAGGGAATGA 1050 0.5381 MCNKNSPSSSDIQTTSIMKRTRKPNRRYYHNSSSSSSSSSSTTSFKLHRRGNRTKTRKPKFVSLKLQLSEPKKKMASTKPKPKPKAEQLQQQQQLQQQQQQQQPQLNLFPLHPDHHDMHEEQNMALLFSSDGGATLNGLLEEGSTTTTTTSVLTCPAEDTGNWLVRKAMRRRESEEGSEERWVCYSEVVEEKKEAMEEVTSYSVKGETKTTSFGFGLLSLKLDHQGILNAWSDKGSLYVAGEEEGALQTVPDIFNGFLFHNAVAPHVAWDGWGSGGVVGNAWSVHEECGANKANVKEETSWKLAQREASVQRYKEKRQSRLFSKRIRYEVRKLNAEKRPRMKGRFVKRE* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0693 349 MobiDBLite consensus disorder prediction 1 19 - -
Gso19g0693 349 PANTHER CCT MOTIF FAMILY PROTEIN 40 349 - -
Gso19g0693 349 Pfam CCT motif 306 348 IPR010402 GO:0005515
Gso19g0693 349 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 40 349 - -
Gso19g0693 349 ProSiteProfiles CCT domain profile. 306 348 IPR010402 GO:0005515
Gso19g0693 349 MobiDBLite consensus disorder prediction 1 103 - -
Gso19g0693 349 MobiDBLite consensus disorder prediction 28 47 - -
Gso19g0693 349 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0693 Gso-Chr19 28856256 28870706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0693 218 348 C2C2-CO-like Transcription Factor Family AT1G73870 41.985 6.81e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso19g0693 CCT 3.2e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0693 - - gmx:100811815 622.854