Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0683 ATGTTCTCATGCGCCACCGCTTTGCTTCTCCTCCTAGCCATGGCCACTACCGCCTACTGTAGCTCCAAAGAAATGAAGGCTTTAAAGATGGTCCAAATCCAGGTCTCACAAGCTAGGAGTTGGGTTGATGGCTACGTGAGATTGCATGGCCTTTTGGATAAAAAATATGTGGCCCTAGAAGACTGTGTCAAGCTCTATGGGGAGAGTGAGTCTAGGCTTTCTCACATGTTGACTGACATGAACGTTTATACCACACATGATGCACTTACATGGATTAGTTCTGTGATGACAAGCCACAAAACTTGTTTAGATGAGTTGAAGGCAAAAGGGTTTCCAGAACCACCTCAGGAATTGGATAAAAACATGACCATGATGCTTAGGGAAGCACTTGTTTCGTATGCAAAGAACAGAGGCAAAACCAAAGAACCACTTCAGGAAACATTGTTAGAATCTAATGGTGGTCTTTTAGCATCATGGAGTAGTGGAACTTCTAATGCAGACTTCACAGTGGCACAAGATGGTTCAGGCACCCACAAAACAATCATTGAAGCAATAGATGCACTAGCTGCAATGGATAGTAGTCGTCCTTCAAGACCAGTTATATACGTAAAATCAGGGGTCTACAATGAGAAAGTGGATATTGGAATCAATTTGAAGAATGTGATGTTTGTAGGAGATGGCATAGATCAAACTATTGTCACTGGCAACAAAAATGTCATTCAGGGTTATTCAACTATTAGCTCAGCCACATTTGATGTATCAGGGGATGGGTTTTGGGCGAGAGATATGACATTTGAGAACACAGCAGGGCCAAGTGGGCACCAAGCAGTGGCATTAAGAGTCAGTTCAGATCTATCAGTCTTCTATAAATGTAGCTTCAAAGGTTACCAAGACACTCTTCTTGTGCATTCAAATAGACAATTTTATCGTGATTGCCACATATATGGCACCATTGATTTTATATTTGGTGATGCTTCAGTGGTGTTCCAAAATTGTGACATCTTTTTAAGAAGACCAATGGACCACCAAACCAACTTCATCACAGCACAAGGAAGAGATGATCCTAACAAACCCACTGGGATTTCAATCCAAAGTTGTCAGGTTAAGCCTGCTTATGATTTTGACTCTTATAAGGACTCAATCAGGAGCTACTTAGGCAGGCCTTGGAAACAATACTCAAGGACTCTATTTCTAAAGACAGATTTAGATGGATTGATTGACCCAAAAGGATGGGGTGAATGGAATGGAGACTTTGCACTTTCAACTTTGTACTATGGAGAGTACATGAACACCGGGAGTGGTGCCTCTACCCAAAACAGGGTGACATGGCCTGGTTTCCGTGTGCTGAATAATGATGATGAGGCCACACCCTTCAGTGTGAGTCAATTCTTGCAAGGAGAACAATGGATTCCAGCTACAGGTGTGCCATTCTGGTCTGGAATTTAA 1446 0.4232 MFSCATALLLLLAMATTAYCSSKEMKALKMVQIQVSQARSWVDGYVRLHGLLDKKYVALEDCVKLYGESESRLSHMLTDMNVYTTHDALTWISSVMTSHKTCLDELKAKGFPEPPQELDKNMTMMLREALVSYAKNRGKTKEPLQETLLESNGGLLASWSSGTSNADFTVAQDGSGTHKTIIEAIDALAAMDSSRPSRPVIYVKSGVYNEKVDIGINLKNVMFVGDGIDQTIVTGNKNVIQGYSTISSATFDVSGDGFWARDMTFENTAGPSGHQAVALRVSSDLSVFYKCSFKGYQDTLLVHSNRQFYRDCHIYGTIDFIFGDASVVFQNCDIFLRRPMDHQTNFITAQGRDDPNKPTGISIQSCQVKPAYDFDSYKDSIRSYLGRPWKQYSRTLFLKTDLDGLIDPKGWGEWNGDFALSTLYYGEYMNTGSGASTQNRVTWPGFRVLNNDDEATPFSVSQFLQGEQWIPATGVPFWSGI* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0683 481 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 7 480 - -
Gso19g0683 481 TIGRFAM PME_inhib: pectinesterase inhibitor domain 29 130 IPR006501 GO:0004857
Gso19g0683 481 Gene3D Invertase/pectin methylesterase inhibitor family protein 11 135 IPR035513 -
Gso19g0683 481 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 4 124 IPR035513 -
Gso19g0683 481 CDD PMEI-like_4 25 137 - -
Gso19g0683 481 Pfam Plant invertase/pectin methylesterase inhibitor 33 129 IPR006501 GO:0004857
Gso19g0683 481 SMART PMEI_2 15 132 IPR006501 GO:0004857
Gso19g0683 481 SUPERFAMILY Pectin lyase-like 163 480 IPR011050 -
Gso19g0683 481 ProSitePatterns Pectinesterase signature 2. 314 323 IPR033131 -
Gso19g0683 481 PANTHER PECTINESTERASE 7 480 - -
Gso19g0683 481 Gene3D - 161 481 IPR012334 -
Gso19g0683 481 Pfam Pectinesterase 167 467 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0683 Gso-Chr19 28073614 28084398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0683 6 481 Carbohydrate Esterase AT3G60730 54.545 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0683 K01051 - gmx:100810741 975.311