Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0647 ATGGAGAACTTCGTGCAAGGAGATGAACTTGACAACAGGGTTACTATTGAGGATGGTGTTGGAAATATATTTACTGTTGATATTGGTATGGAAATGACATCTGGGAAACCTGGTTTTGTGTTTCTACGGCACTTGGGAGGAGGCACTATCACAGAAGTCTTGGGAGGAGGCACTAGCATTGGCAACAACAGCAAGTCCATCGAGATCAGAAATTTCCTTGACGAGAAGAAGGTGAGGAAAGTCAAAATGCTTGATGGCGTTTCAGTTGTTAGATTTGAAAAGGTGAAAGATGAATTAATTTTGGATGGAAATGACATTGAACTTGTTTCTAGTTCATGCGCTCTTATTAACCAGAAATGTCATGTTAAGAACAAGGATATCCGGAAGTTTCTTGATGGTATTTATGTCAGTGAGGATGAAAGCATTTGTGTTGGTTTTTGGTTTGGAGACCCTTTTTTTTAA 462 0.3918 MENFVQGDELDNRVTIEDGVGNIFTVDIGMEMTSGKPGFVFLRHLGGGTITEVLGGGTSIGNNSKSIEIRNFLDEKKVRKVKMLDGVSVVRFEKVKDELILDGNDIELVSSSCALINQKCHVKNKDIRKFLDGIYVSEDESICVGFWFGDPFF* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0647 153 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 58 140 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso19g0647 153 PANTHER RIBOSOMAL PROTEIN L6-RELATED 58 140 - -
Gso19g0647 153 SUPERFAMILY Ribosomal protein L6 53 139 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso19g0647 153 Pfam Ribosomal protein L6 66 133 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gso19g0647 153 Gene3D - 57 144 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0647 Gso-Chr19 26763714 26767411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0647 58 142 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 81.176 3.38e-42 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0647 K02940 - gmx:100811498 147.517