Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0642 AATGAAATTCAGATCCTCACACGTTTGCGCCACAGAAATCTTGTGTCACTCTATGGCTGCACTTCACGTCAGAGCCGTGAACTACTGCTTGTGTATGAATACATTCCAAATGGCACAGTTGCCAGCCATCTCCATGGGGAATTGGCAAAGCCTGGCTTACTAACGTGGTCCTTACGAATGAAAATTGCCGTAGAGACAGCTAGTGCATTGGCTTATCTTCATGCTTCTAAAATCATTCACCGTGATATCAAAACTAACAACATTCTCCTTGACAACAGTTTCTATGTTAAAGTTGCAGATTTTGGCCTTTCAAGACTATTCCCCAATGACATGACTCATGTCTCCACAGCACCACAAGGGACCCCGGGTTATGTTGACCCGGAATATCACCAATGCTACCAGCTAACTAGCAAGAGTGATGTGTATAGCTTTGGAGTTGTGCTCATTGAGCTAATATCATCTATGCCAGCTGTTGACATGAACAGGCATAAGGATGAAATTAACTTGTCTAATCTAGCCATAAAGAAGATCCAAGAAAGGGCATTGAGTGAACTGGTTGACCCTTATCTGGGTTTTGATTCAGACACAGAGGTGAAGAGGATGATAATTGAGGCGACAGAGTTGGCCTTTCAATGTTTGCAACAGGACAGGGAATTGAGACCTTCCATGGATGAAGTCCTTGAGGTATTGAAGAGAATTGAAAGTGGGAAGGATGAGCTAAAGCATCTAGAAGAAGCAGTTCATGGTTCTGGGGTTTCACATAATAATAATGTAACAACCTCAACAGAATTGGATGAAGCTGGATTGTTGAAGAATAGGAAGCCACCTTCTTCACCAATATCCGTTCCTGATAGTCGGGAAAGTAAATCCACTACGCCTAATGCCAGTTCTTAA 894 0.4273 NEIQILTRLRHRNLVSLYGCTSRQSRELLLVYEYIPNGTVASHLHGELAKPGLLTWSLRMKIAVETASALAYLHASKIIHRDIKTNNILLDNSFYVKVADFGLSRLFPNDMTHVSTAPQGTPGYVDPEYHQCYQLTSKSDVYSFGVVLIELISSMPAVDMNRHKDEINLSNLAIKKIQERALSELVDPYLGFDSDTEVKRMIIEATELAFQCLQQDRELRPSMDEVLEVLKRIESGKDELKHLEEAVHGSGVSHNNNVTTSTELDEAGLLKNRKPPSSPISVPDSRESKSTTPNASS* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0642 297 Coils Coil 226 246 - -
Gso19g0642 297 SMART serkin_6 1 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0642 297 Gene3D Transferase(Phosphotransferase) domain 1 36 246 - -
Gso19g0642 297 Gene3D Phosphorylase Kinase; domain 1 1 35 - -
Gso19g0642 297 Coils Coil 160 180 - -
Gso19g0642 297 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 296 IPR044652 -
Gso19g0642 297 MobiDBLite consensus disorder prediction 246 297 - -
Gso19g0642 297 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 1 296 - -
Gso19g0642 297 ProSitePatterns Serine/Threonine protein kinases active-site signature. 78 90 IPR008271 GO:0004672|GO:0006468
Gso19g0642 297 MobiDBLite consensus disorder prediction 278 297 - -
Gso19g0642 297 Pfam Protein kinase domain 1 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0642 297 MobiDBLite consensus disorder prediction 250 266 - -
Gso19g0642 297 ProSiteProfiles Protein kinase domain profile. 1 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0642 297 SUPERFAMILY Protein kinase-like (PK-like) 1 233 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0642 Gso-Chr19 26134001 26135248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0642 1 297 Receptor kinase-like Gene Family AT1G25390 63.455 1.22e-127 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gso19g0642 Pkinase 2.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0642 - - gmx:100808963 587.415