Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0638 ATGGCAACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTAGCCAAGGAATTAAAAAATATTGATGAATCACCTCCTGAGGGGATTAAAGTTGTGGTAAATGATGATGATTTTTCAATAATATATGCTGACATTGAAGGCCCAGCTGGAACTCCTTATGATAATGGAGTTTTCCGCATGAAGTTGTTATTGTCTCGTGATTTCCCTCACTCTCCTCCTAAAGGGTTTTTCCTTACAAAGATTTTCCATCCAAATATTGCAACCAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAACCCTAACCTTGGGTTGCGTCATGTTCTCATTGTTGTTAGGTGTCTACTAATTGAGCCATTTCCAGAATCAGCTCTAAATGAACAGGCTGGGAAACTGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGACTTTACACAGGAATCCATGCAAAACCAAAGTCCAAATTCAAAACTGGAGCTATATCTGAATCTACAACTGCTCTGAATGTTGATCAGAGTAACACCTCAGTTCTTAATGCTGAAGTCAAAACTGCACCATCGGGTGCGACATTGCCATTGCAATCACCATTGGCCCCCTCAACTAACAACACAACAAGAGGAAACAAGCAGGAACAGGCTGTGGTTGGAGCTGAGCCAGCTGTTAACAGTTCTTGTGCCACATCCATGGTTCATGCTGCTGCACCAATGAAGGCAGGTGGAGTAGCAAAAGCTCAGGCTGACAAGAAGAAGATTGATGCCCGGAAAAGAAGTTTGAAAAGATTGTAA 801 0.4132 MATNENLPPNVIKQLAKELKNIDESPPEGIKVVVNDDDFSIIYADIEGPAGTPYDNGVFRMKLLLSRDFPHSPPKGFFLTKIFHPNIATNGEICVNTLKKDWNPNLGLRHVLIVVRCLLIEPFPESALNEQAGKLLLENYEEYARHARLYTGIHAKPKSKFKTGAISESTTALNVDQSNTSVLNAEVKTAPSGATLPLQSPLAPSTNNTTRGNKQEQAVVGAEPAVNSSCATSMVHAAAPMKAGGVAKAQADKKKIDARKRSLKRL* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0638 266 Coils Coil 246 266 - -
Gso19g0638 266 CDD UBCc 12 151 IPR000608 -
Gso19g0638 266 Gene3D Ubiquitin Conjugating Enzyme 4 158 IPR016135 -
Gso19g0638 266 MobiDBLite consensus disorder prediction 193 216 - -
Gso19g0638 266 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 4 260 - -
Gso19g0638 266 SUPERFAMILY UBC-like 5 157 IPR016135 -
Gso19g0638 266 Pfam Ubiquitin-conjugating enzyme 15 150 IPR000608 -
Gso19g0638 266 PANTHER - 4 260 - -
Gso19g0638 266 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 83 98 IPR023313 -
Gso19g0638 266 MobiDBLite consensus disorder prediction 243 266 - -
Gso19g0638 266 MobiDBLite consensus disorder prediction 193 217 - -
Gso19g0638 266 SMART ubc_7 13 156 - -
Gso19g0638 266 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 156 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0638 Gso-Chr19 25833465 25838260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0638 12 98 Miscellaneous Gene Families AT2G33770 28.090 1.19e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0638 K10583 - gmx:100794952 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0638 19 25833465 25838260 Gso16g0365 16 4134580 4137936 GST