Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0629 ATGGAGGAAGCGAAGGAAAAGTGTTGGAGAATGGAAGTGGAGGAGAAGCTGAAGAGGCTGCAATCTCTTCTCTTCGGCGCTGAGCGCGCTCTCGAGAACAATGACTTCTCCTCCGCTTACGTCCTCGCGCTTCGCCTCCTCGGATTCCTCGACGCGAATTCCCACTCCGACGTCGACGAAGCCTTCGTGCAACCGATTCGTCGCGACGCTCTCGCCAAACTCCACTTCGCTCGCCAATCCCTCGCTCCTCAATCTGATCGCCAAGCTTTTGAACAAGCAAAGAAATCTCCAGGACGCATTTTTGGCACTACAGGAGATATTGACATTGAGAAGATTCAGAACTCAAAGTACTTCCAAGCTCTTGTCAAGCAATCTAAAGAAAAAGATGAGAATCAACCCGTTGATCACCTGGGGAAACAGGACAAAGCAGGCAGCAAAGCCTCAAAGCAAATGGTGCAAACTAAGTTACCATCCATGTATGGGAAAAGCAGCTTGAGAACTAGCAATGGTCCCAAGAGTTTTTTGAACATGAAAAATAATAGCTCTGAGGACTGCATGATTCTTGATAGGCCTCAATCTCATGCTAGCCATATAAAGGGTCCTGGTTTCTCTTCTATATTGCAAGTTGAAGGAGAAGAAAGAGCTTTTGGAAGCACATTCTCCGCAAAACGTGTACACATGGAAAACAATTGTCCCAGAGTTGGATTTGTGAAGTCACCTTCAAGTAAGGAGGATGTTAACCCTGATGCTTGTGGCAACGGGTTTGTTACTGCTAGAGCAAAACTGGAAATGGAAGCAAAGCAGAAGCGAGGAGTAGGTGGTTCACCCAGTGCCTCTGTCTCACCACAATGTGATAACAATTCTGCCAACAGGTTGTATGGTGGAAGATCATATGGTGTTTCACGACGTGGTGTCCGTGGTAATTTTGTTCCCCCCATTAAATCCAATGGGAACAATGCTGGAAATATGAGCGCACGCGTTGCTGGAAAATGTGATGATTCTTTAGATGACTCTACAAAGAAATGTCTGGAAATCCTATGTGGTCCTGATGGTGAGCTTCCTGAGAAATTGAGGAATTTGGAACCACGCCTCATTGAACATGTTAGTAACGAGATTATGGATAGAGATCCCAATGTCCGGTGGGATGATATAGCTGGATTGGAGCATGCCAAGAAATGTGTCAATGAGATGGTTGTATATCCTCTGCAACGTCCTGATATATTCATGGGCTGTCGTTCCCCTGGGAGGGGTCTGCTTCTCTTTGGTCCCCCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCGAAGGCAACCTTCTTTTACATATCGGCAAGTTCATTGACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTTGTAAGAGCCCTTTTTGGAGTTGCCAGCTGTCGTCAGCCAGCAGTAATTTTTGTTGATGAAATAGATTCGCTCCTGTCTCAGCGTAAATCAGACGGTGAGCATGAATCAAGTAGACGGCTAAAGACGCAGTTCCTCATTGAAATGGAAGGCTTTGACAGTGGTAGCGAGCAAATTCTGCTTATAGGGGCAACAAATCGTCCCCAAGAGCTTGATGAAGCAGCACGAAGGAGACTTACTAAAAGACTTTATATTCCCCTACCTTGCTCAGAGGCAAGAGCTTGGATTACACGTAACCTTCTAGAGAAAGATGGATTATTCAAGCTATCAAGCGAGGAAATGGATATCATATGCAAATTAACGGAAGGTTATTCAGGATCAGACATGAAAAATTTAGTGAAGGATGCTTCTATGGGACCCCTAAGAGAGGCTTTAGGTCAAGGTATAGAAATTACAAAGTTGAAAAAGGAGGATATGCGACCTGTAACTCTTCAGGACTTCAAGAATTCCCTCCAAGAGGTGAGGCCTTCTGTTTCCCCAAATGAACTTGTAACTTATGAACAATGGAACAAGCAATTTGGAAGCCTATCACTGTAG 1980 0.4515 MEEAKEKCWRMEVEEKLKRLQSLLFGAERALENNDFSSAYVLALRLLGFLDANSHSDVDEAFVQPIRRDALAKLHFARQSLAPQSDRQAFEQAKKSPGRIFGTTGDIDIEKIQNSKYFQALVKQSKEKDENQPVDHLGKQDKAGSKASKQMVQTKLPSMYGKSSLRTSNGPKSFLNMKNNSSEDCMILDRPQSHASHIKGPGFSSILQVEGEERAFGSTFSAKRVHMENNCPRVGFVKSPSSKEDVNPDACGNGFVTARAKLEMEAKQKRGVGGSPSASVSPQCDNNSANRLYGGRSYGVSRRGVRGNFVPPIKSNGNNAGNMSARVAGKCDDSLDDSTKKCLEILCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVNEMVVYPLQRPDIFMGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPCSEARAWITRNLLEKDGLFKLSSEEMDIICKLTEGYSGSDMKNLVKDASMGPLREALGQGIEITKLKKEDMRPVTLQDFKNSLQEVRPSVSPNELVTYEQWNKQFGSLSL* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0629 659 PANTHER AAA DOMAIN-CONTAINING 69 656 - -
Gso19g0629 659 MobiDBLite consensus disorder prediction 124 172 - -
Gso19g0629 659 SMART AAA_5 414 550 IPR003593 -
Gso19g0629 659 MobiDBLite consensus disorder prediction 124 143 - -
Gso19g0629 659 ProSitePatterns AAA-protein family signature. 520 539 IPR003960 GO:0005524|GO:0016887
Gso19g0629 659 Gene3D - 377 651 IPR027417 -
Gso19g0629 659 Gene3D - 549 635 - -
Gso19g0629 659 MobiDBLite consensus disorder prediction 146 172 - -
Gso19g0629 659 Coils Coil 10 30 - -
Gso19g0629 659 Pfam Vps4 C terminal oligomerisation domain 621 655 IPR015415 -
Gso19g0629 659 Pfam ATPase family associated with various cellular activities (AAA) 418 548 IPR003959 GO:0005524|GO:0016887
Gso19g0629 659 PANTHER FIDGETIN-LIKE PROTEIN 1 69 656 - -
Gso19g0629 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 654 IPR027417 -
Gso19g0629 659 CDD AAA 411 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0629 Gso-Chr19 24558493 24565378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0629 333 657 Calmodulin-binding Proteins AT3G56690 30.655 1.59e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0629 K22766 - gmx:100789161 1283.86