Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0622 ATGCAAGAACAAAAGCTAAAGACTGGTGTTGTAAAAGACAACTGCAATCCTGAGTGGAATGAAGAATTCACCCTTTCCATAAAGGACGTCAAAACCCCAATACATCTTTCGGTTTATGACAAGGACACTTTATCTGGAGATGACAAAATGGGTGAGGCAGATATAGACTTGAAACCGTATGTTCAGTGTGTACAAATGGGGTTGAACGAGCGCCCAGATGATTCTTCAGTCAAGAGGATTCAACCAGATGACACTAATTGCCTTGCTGAAGAGAGCAACTGCATTTGGCAAAATGGAAATATTATCCAAGAAATGATTTTGAAATTGAGAAATGTCGAGAGTGGGGAAGTAGTTGTTGAAATTGAGTGGGTTGATGTTATTGGTTGCAAGGGCTTATCACAGGTAGAACTTTAA 414 0.3986 MQEQKLKTGVVKDNCNPEWNEEFTLSIKDVKTPIHLSVYDKDTLSGDDKMGEADIDLKPYVQCVQMGLNERPDDSSVKRIQPDDTNCLAEESNCIWQNGNIIQEMILKLRNVESGEVVVEIEWVDVIGCKGLSQVEL* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0622 137 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 58 IPR035892 -
Gso19g0622 137 Gene3D C2 domain 1 129 IPR035892 -
Gso19g0622 137 ProSiteProfiles C2 domain profile. 1 73 IPR000008 -
Gso19g0622 137 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 134 IPR044562 -
Gso19g0622 137 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 134 - -
Gso19g0622 137 Pfam C2 domain 2 59 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0622 Gso-Chr19 23613240 23619963 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0622 5 134 C2H2 Transcription Factor Family AT1G70790 58.333 4.68e-53 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0622 - - gsj:114399173 277.33