Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0620 ATGGACAATAATAATATTCTGGGTCTTCTCAAGCTTCGAATTAAAAGAGGCATTAATCTTGCCATTCGCGATGCTCGTGCCAGCGATCCTTATGTCGTTGTCAACATGGGCGATCAGAAGCTGAAGACTCGTGTCATAAAAAAAAACTGCAATCCTGACTGGAATGAAGAATTGACCCTCTCTGTAAAGGACATTAAAACCCCAATACATCTGACGGTTTATGACAAAGACACTTTCTCTGTGGATGACAAAATGGGTGAGGCAGAGATAGACTTAAAACCATATGTTCAGTGTAAGCAGATGGGATTGGGTAAGCTCCCAAATGGTTGTTCACTCAAGAGGATCCAGCCAGATAGAACTAATTACCTTGCTGAAGAGAGCAGCTGCATTTGGCAAAATGGAAAGATTGTCCAAGAAATGTTTTTGAGATTGAGAAATGTTGAGAGTGGGGAGATACTTGTGGAAATTGAGTGGGTTGATGTTGTTGGTTGCAGGGGCTTATCACAGGTAGAACTTTAA 519 0.4143 MDNNNILGLLKLRIKRGINLAIRDARASDPYVVVNMGDQKLKTRVIKKNCNPDWNEELTLSVKDIKTPIHLTVYDKDTFSVDDKMGEAEIDLKPYVQCKQMGLGKLPNGCSLKRIQPDRTNYLAEESSCIWQNGKIVQEMFLRLRNVESGEILVEIEWVDVVGCRGLSQVEL* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0620 172 CDD C2_ArfGAP 7 150 - -
Gso19g0620 172 Pfam C2 domain 9 94 IPR000008 -
Gso19g0620 172 ProSiteProfiles C2 domain profile. 1 105 IPR000008 -
Gso19g0620 172 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 5 165 IPR044562 -
Gso19g0620 172 Gene3D C2 domain 4 165 IPR035892 -
Gso19g0620 172 SMART C2_3c 9 104 IPR000008 -
Gso19g0620 172 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 8 101 IPR035892 -
Gso19g0620 172 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 5 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0620 Gso-Chr19 23409242 23413638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0620 40 169 C2H2 Transcription Factor Family AT1G70790 64.394 1.12e-58 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0620 - - gmx:100792328 350.903