Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0616 ATGGGATCTCAGGGTGGGGCAGTGCAAGAGCCAAAGACTACTACCCCTTTGGCTAGGCAAGGGTCCTTGTATAATCTGACCCTTGATGAGGTGCATAACCAACTTGGGAATTTGGGGAAGCCACTTGGCAGCATGAATCTTGATGAGTTGCTGAAGAGTGTGTGGAGTGCTGAAGCTGGTGGTGGTGGTGAGGCTTCTGGCTGGGACTTTGGTGTTGGTGATGCTACTAACATGCCGCATGGCAAGGCTGCTGCTTCCGGCTCCTCTCTGAATCCTCAGGGGAGCCTAACTTTGTCTAGGGATCTTAGCAGGAAAACTGTTGATGAGGTTTGGAAAGATATGCAACTGAAGAAGGTCACTAATAGGGATAAAAAAATCCAGGAAAGGCAAGCTACACTGGGTGAGATGACTCTGGAGGACTTCTTGGTGAAGGCTGGAGTGGTTGCTGAAGCTTTGCCTACCAAGGGTGGGGCTATGTCAGGGGTTGATTCAAATGGGGCTTTCTCACAACATGGCCATTGGTTGCAATACCAGCAGCTCTCTTCTTCGACGCAGCAGCCGAATGTGATGGGGGGTTATGTGGCTGGCCATGCCATTCAGCAGCCTTTCCAGGTTGGAGTGAATCTGGTTTTGGATGCAGCATACTCCGAGCAGCCGGCTTCTTTAATGGGGACGTTATCGGATACACAAACTCCAGGTCGAAAAAGGGGTGCCTCTGGTGTTGTGGTGGAGAAAACTGTGGAGAGGAGGCAGAAGAGGATGATTAAAAATAGGGAATCTGCTGCTCGGTCACGGGCAAGAAGACAGGCATACACACAAGAACTGGAGATTAAAGTTTCACGATTAGAAGAGGAGAATGAAAGGCTTAGAAGACTAAATGAAATGGAGAGGGCATTGCCATCTGTGCCACCACCTGAGCCTAAGCCAAAGCAACAGCTTCGCAGAACTAGTTCAGCCATCTTTTGA 966 0.4979 MGSQGGAVQEPKTTTPLARQGSLYNLTLDEVHNQLGNLGKPLGSMNLDELLKSVWSAEAGGGGEASGWDFGVGDATNMPHGKAAASGSSLNPQGSLTLSRDLSRKTVDEVWKDMQLKKVTNRDKKIQERQATLGEMTLEDFLVKAGVVAEALPTKGGAMSGVDSNGAFSQHGHWLQYQQLSSSTQQPNVMGGYVAGHAIQQPFQVGVNLVLDAAYSEQPASLMGTLSDTQTPGRKRGASGVVVEKTVERRQKRMIKNRESAARSRARRQAYTQELEIKVSRLEEENERLRRLNEMERALPSVPPPEPKPKQQLRRTSSAIF* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0616 321 Coils Coil 268 299 - -
Gso19g0616 321 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 2 319 IPR043452 GO:0003700|GO:0045893
Gso19g0616 321 SUPERFAMILY Leucine zipper domain 249 295 IPR046347 GO:0003700|GO:0006355
Gso19g0616 321 Pfam bZIP transcription factor 249 292 IPR004827 GO:0003700|GO:0006355
Gso19g0616 321 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 247 291 IPR004827 GO:0003700|GO:0006355
Gso19g0616 321 MobiDBLite consensus disorder prediction 1 20 - -
Gso19g0616 321 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 252 267 IPR004827 GO:0003700|GO:0006355
Gso19g0616 321 PANTHER BZIP TRANSCRIPTION FACTOR 2 319 - -
Gso19g0616 321 MobiDBLite consensus disorder prediction 292 321 - -
Gso19g0616 321 SMART brlzneu 245 315 IPR004827 GO:0003700|GO:0006355
Gso19g0616 321 Gene3D - 247 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0616 Gso-Chr19 22522821 22528376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0616 1 321 bZIP Transcription Factor Family AT3G56850 54.464 5.01e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso19g0616 bZIP_1 1e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0616 K14432 - gmx:100170741 590.882