Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0609 ATGGGAAGCAGAAAGGAAGAAGAGAGGAACGAGAAAATTATCAGAGGTCTCATGAAGCTTCCGCCGAATCGAAGATGTATCAACTGCAACAGCTTGGGACCACAATATGTATGTACGAGTTTTTGGACTTTCATTTGTATGACATGCAGTGGAATACATCGTGAATTTACTCATCGTGTGAAGTCTGTGTCAATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGAGGTAACCAGCGTGCAAGGGAATTATATTTGAAAAATTGGGACTTCCAGAGACAGCGGCTGCCAGATAACAGCAATGTTGATAAAATAAGGGAATTTATAAGGAGTGTGTATGTGGATGGAAGATATGCTGGGACGAAGTCTTCGGAAAAGCCTCCAAGAGATGCACAGAGTCCTGGAATTCATGAAGATGAGATTAGGCGTGCCAGTTCTTATCATTCATATTCTCAAAGTCCTCCATATGATTATCAATATGAGGATCGGCGGTATGGAAAACAAGTAGCTGCACTGACCAGGAAGCCTGGTTCAGATAAAGCTCGCTATAAAGGGAAGATGTCTAGTATTATATACAGTCCTGACCGCTTCAGTGATCACGTGTATGATGACAGATTTGCAAATGAGAGATCTGGTCCACGAATTTCCGACTTTTCTGTGTCTAGTGGTGGCGAACAATTGAAATCTGATGTTCAGTCTCCCAACTTTCATAAGGATATCAAGATTAGCAGTCCATCCTATCAGCGGCGTTCTGGTACAAGTTCAAGTGAAGATGTGTGGTCCCAAGCAAGAAATGCATCTCTGGAAATTAATGCCAATGCCAAGAGAGATGTAGATGGAATTCGTCCTCCGCAGAGAACTGCGTCAGCTCAATCAACAGACAACAAATTTTCATCCTTGAGATCTTATAATTCTGGCAGTTTAGCTGATTTTTTCTCAGAACCAGTCCAAGCTTCAGAACCACTTCAGAATAGAGCATTTGGCATTCCACGACCACCTGGTCCTACAAGATCTGTTAGCATGGACTTCTCCAAGGCACCCCTGGAATCAGCTTCATCTGTTGATCCTTTTCAGTTTCCAGCAGCACCATCTGCAGCTCCGACAGTGGATTTGTTTCAATCATCTGTTTCATCTGCAGCTCCATCTTTCAATGAGAATCAACTTACTCAAACATCTCAACTTGCATCTATTGATTTTTTTGCCGATTTTTCAGAGCAGCCTTCTACTGTAACCTCAGATGGGAAGGCACTGGGATTATCTGTCCCTAAAAACAAAGGATGGGCAACTTTTGATATGCCTCAGAGCACCTCCTCTGCTGCACAAGTGGAAATTCCAGCCACTGTACCCTCAAGTGCTAAATCTATAGAAGAAAGATTTGATCCATTTTCAACCTCACATGCAAACGTGCAACAATGGCCATCTTTTGAAATTTCTAGTGTCAATGCACCTTCGTCTGTTATATCTAATTTAAGGCATGATGGTGTGTGGAATGGAGAAGAACAAGTTTCTGCTATAGCAGAAAACACTAAACCATGGAATGCATTTGAAGATTCTGGTGACCATCATCATCTTGTGGATGGCCTTAGTCAAGGATTACAATTGCACAATTTTCCATCAGCTGATAATCATATTTTGGGTTTAATAGAGTCGGAGGGATCCAATGAAGATGAAGTTAAAGGCATTGCCCCTGTTGGTCGATTTGATAATCATGACATCCCATCACATGTCAGTGGCTCAGCATATCCCCCACCCATGCTTCCCCCAATGGGAGATATTCAACATAATGAAACGAAATCTAAATCAACCAATCCATTTGATTATCCCTATGAAACTGATGTAGATCACAACAATATGTTTCTGGATATGGGTTCTTTGCAAGCTGCACTGCCAGATGCCCTGTTTCCAGCCACCTTCCATGGTGGTATAGCTGAATCTTGGCTTCCTCAAAACCCGGTGACCTCATGTATATCCTCTGCTGGAGAAGGTGGTTTGTCATTCATGGCTATGCAATCACCAAGTTCACAAATACAGAACATCCAGAAACCGGAACCAGTTGCTTCGATAGGGGGAAATCCTTTTGCATAG 2094 0.4241 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTSFWTFICMTCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQRARELYLKNWDFQRQRLPDNSNVDKIREFIRSVYVDGRYAGTKSSEKPPRDAQSPGIHEDEIRRASSYHSYSQSPPYDYQYEDRRYGKQVAALTRKPGSDKARYKGKMSSIIYSPDRFSDHVYDDRFANERSGPRISDFSVSSGGEQLKSDVQSPNFHKDIKISSPSYQRRSGTSSSEDVWSQARNASLEINANAKRDVDGIRPPQRTASAQSTDNKFSSLRSYNSGSLADFFSEPVQASEPLQNRAFGIPRPPGPTRSVSMDFSKAPLESASSVDPFQFPAAPSAAPTVDLFQSSVSSAAPSFNENQLTQTSQLASIDFFADFSEQPSTVTSDGKALGLSVPKNKGWATFDMPQSTSSAAQVEIPATVPSSAKSIEERFDPFSTSHANVQQWPSFEISSVNAPSSVISNLRHDGVWNGEEQVSAIAENTKPWNAFEDSGDHHHLVDGLSQGLQLHNFPSADNHILGLIESEGSNEDEVKGIAPVGRFDNHDIPSHVSGSAYPPPMLPPMGDIQHNETKSKSTNPFDYPYETDVDHNNMFLDMGSLQAALPDALFPATFHGGIAESWLPQNPVTSCISSAGEGGLSFMAMQSPSSQIQNIQKPEPVASIGGNPFA* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0609 697 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Gso19g0609 697 MobiDBLite consensus disorder prediction 212 301 - -
Gso19g0609 697 Gene3D Arf GTPase activating protein 2 132 IPR038508 -
Gso19g0609 697 MobiDBLite consensus disorder prediction 217 272 - -
Gso19g0609 697 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Gso19g0609 697 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Gso19g0609 697 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Gso19g0609 697 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Gso19g0609 697 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Gso19g0609 697 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 697 - -
Gso19g0609 697 PANTHER ARFGAP/RECO-RELATED 1 697 IPR044820 GO:0005096
Gso19g0609 697 MobiDBLite consensus disorder prediction 134 148 - -
Gso19g0609 697 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Gso19g0609 697 CDD ArfGap_AGFG 11 121 - -
Gso19g0609 697 MobiDBLite consensus disorder prediction 122 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0609 Gso-Chr19 21702037 21710169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0609 14 137 C2H2 Transcription Factor Family AT3G07940 32.090 5.28e-12 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0609 19 21702037 21710169 Gso13g0176 13 10488022 10490309 GST
Gso5g0723 5 13017084 13025147 Gso19g0609 19 21702037 21710169 GST