Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0604 ATGTGTGCATCAAGGGCTGGTTATCGGATGGAGTTGCATTGTATGGAGAAAAATGGTAAACAGACAACAAGAATGGTTTCTTATTGTGCTTACCACAGAGCTCCCAATCCAGACACTGTTTTAATTATGCAAACCCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTTCAAACTAAGAGAAAAGCTGGATCAAGATTGATTTCATCTAAAAGAATAAAGGTTGAAGACACTTCTCCTGCAGAGAACACTAGACATGAGCCATTCTCTGCTGCTAGGTGTCGAATATATCGAAGAACAAATCATACAAAAAAGAGAGCAGCAGGTGAAGCCATTGCTCATCATGTGAGGGGTCACTACCATCATCCTTTAGATGCAATACAGAGTTTAAATGCAGACAGAATGGTAGACAAGCCTCCAGCATTTTCTTCTTTCAGGGAACGCCTTCATCATTTACAGAGAACAGAAAATGAAAGAGTTTTCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGTCAAAATATTCAAGAAGGGGAAATGGTTCTTGAATATCGTGGTGAACAAGTGAGGCGGAGCATTGCAGATCTAAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTATCTTTTCAAGATAAGTGAAGAAGTGGTAGTAGATGCCACTGATAAAGGAAATATAGCACGGCTAATTAACCATTCTTGTATGCCCAATTGCTATGCAAGGATTATGAGTGTGGGTGATGATGAGAGCCGGATTGTACTCATCGCTAAGACTGATGTGTCTACTGGTGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTTAAAGTCCCTTGTTTATGTAAAGCATCAAACTGCCGGAAATTCATGAATTAG 900 0.41 MCASRAGYRMELHCMEKNGKQTTRMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKRKAGSRLISSKRIKVEDTSPAENTRHEPFSAARCRIYRRTNHTKKRAAGEAIAHHVRGHYHHPLDAIQSLNADRMVDKPPAFSSFRERLHHLQRTENERVFFGRSGIHGWGLFARQNIQEGEMVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTDVSTGDELTYDYLFDPDEPDEFKVPCLCKASNCRKFMN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0604 299 Gene3D SET domain 60 299 IPR046341 -
Gso19g0604 299 SMART PostSET_3 283 299 IPR003616 -
Gso19g0604 299 Pfam SET domain 168 273 IPR001214 GO:0005515
Gso19g0604 299 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 299 - -
Gso19g0604 299 SUPERFAMILY SET domain 151 296 IPR046341 -
Gso19g0604 299 PANTHER PHD FINGER PROTEINS 1 299 - -
Gso19g0604 299 CDD SET_SETD1-like 144 295 - -
Gso19g0604 299 ProSiteProfiles Extended PHD (ePHD) domain profile. 1 33 IPR034732 -
Gso19g0604 299 ProSiteProfiles SET domain profile. 157 274 IPR001214 GO:0005515
Gso19g0604 299 SMART set_7 157 280 IPR001214 GO:0005515
Gso19g0604 299 ProSiteProfiles Post-SET domain profile. 283 299 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0604 Gso-Chr19 21024148 21029115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0604 163 299 C2H2 Transcription Factor Family AT2G23740 36.129 7.51e-17 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso19g0604 SET 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0604 - - gmx:100775276 610.142