Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0576 ATGCTTCCACTGCAATTCAGCAACCACCCTCACCACCCTCCACCATCGCTGTTTGTGAGCAGCTCCAACAACAACGCTTGTTGCTCCTCCTCTCGCCTCCTCTACCACCACAACAGAAACAACAAGGTGCACCACCTTCTTCTTCGCTCCAACGTCGGAACCCTCAACCTTAGGGTTTTCGCAGTGTCTGGTAGCTCCGCGTTCAAGATGAACCTCAACGAGTACCTCGTCACTCTCGAGAAGCCCCTAGGCATTCGATTCGCGCTAACTTCTGACGGCAAAATCATCGTCCACTCTCTCACCAAAGGGGGTAATGCGGAGAGGTCCAGGATAATTATGGTGGGCGACACTTTGAAGAAAGCTGGCGATTCGTCTCAGAACACTCTTGTTGAAATTAAAGACGTTGGAGATACACAGAAGGTGCTAAATGAGCAAACAAGTTCTTTTAGCTTGGTTCTTGAGAGGCCAACATCTCCTTTTCCCATTCAACTACTGCACAAGATGAATGATCTTGAAATAGTGTTCAATAGAGGTCGAGTTCCTATTGCCACATGGAACAAGACTCTATTGGCATCAAATTTACAACCATCTAGTGAGAGCTGCGGGAATGCCGGATTTCTGATGTTCAACTCAAAATTTCTTAAACCAAATGGAAGCAAGTTATTGAGCAATCAAAATCAACATATCATCACCCATGGTGAGAGAAACATTGTTACTGAACACACAACACAACTTGCTTGTGTTTTTACCGAAGAAGTGTGTGGAGATGGAGATTGGGCTCATGGAAGTTTTCCGCTTGAGGAATACATTCAGGCTCTGGATCGTTCCAAAGATGAGATGTACTATAATCACTCTCTTGGTATGCGCTATAGTAAGATTACAGAGCAAATATATGTGGGATCCTGTATACAAACAGAAGATGATGTAGAAACCTTGTCAAAAGTTGAGGGAGTTACTGCTGTTCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAATGCAAAATCAATCAATGAATCTTGTCAAAGGAAAAATATTCTCATGATCAACTATCCTATACGGGAGGGGGATTCTTATGATATGAGGAAAAAACTCCCATTTTGTGTGGGACTTTTATTACGGTTGCTAAGGAAGAATCTTCGTGTTTTTGTTACTTGCACTTCTGGATTCGATCGTTCTCCTGCTTGTGTGATTGCATACCTACATTGGATGACAGATGTTTCCCTTCATGCAGCATATACTTGGGTCACTGGGATGCACACATGCAGGCCTGACAGACCGGCAATTGCATGGGCAACATGGGATCTTATAGCCATGGCTGAAAATGGAAGACATGATGGGCCTCCCACACATGCTGTCGTGTTTGTGTGGAATGGTCATGAGGGAGAGGATGTAACTTTGGTAGGAGATTTTACTGGAAATTGGAAAGAGCCACTGAAGGCAAAGCACCAAGGTGGATCAAGACACGAAGTAGAAGTTAAACTACCACAAGGAAAGTATTACTACAAGTTCATTGTTAATGGACAATGGAAGCATTCAACTGCTTCACCAGCAGAAAGGGATGACAGGGGAAATGTTAACAATATAATTGTGATTGGTGAAACTGCCAGCGTTCGGCCTTCTGTTCAGCACCAGCAGAAAGATGCCAACGTTGTCAAAGTGATTGAAAGGCCTTTGAATGAAAAAGAGCGGTTTATGCTGGCGAAAGCAGCTCGTTGTATTGCTTTCTCTATCTGTCCTATCAGATTAGCTCCCAAATAG 1770 0.4379 MLPLQFSNHPHHPPPSLFVSSSNNNACCSSSRLLYHHNRNNKVHHLLLRSNVGTLNLRVFAVSGSSAFKMNLNEYLVTLEKPLGIRFALTSDGKIIVHSLTKGGNAERSRIIMVGDTLKKAGDSSQNTLVEIKDVGDTQKVLNEQTSSFSLVLERPTSPFPIQLLHKMNDLEIVFNRGRVPIATWNKTLLASNLQPSSESCGNAGFLMFNSKFLKPNGSKLLSNQNQHIITHGERNIVTEHTTQLACVFTEEVCGDGDWAHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVETLSKVEGVTAVLNFQSGTEAENWGINAKSINESCQRKNILMINYPIREGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMAENGRHDGPPTHAVVFVWNGHEGEDVTLVGDFTGNWKEPLKAKHQGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTASPAERDDRGNVNNIIVIGETASVRPSVQHQQKDANVVKVIERPLNEKERFMLAKAARCIAFSICPIRLAPK* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0576 589 Gene3D Immunoglobulins 443 539 IPR013783 -
Gso19g0576 589 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 46 589 - -
Gso19g0576 589 CDD DSP_laforin-like 288 434 IPR045204 GO:0019203|GO:0046838
Gso19g0576 589 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 46 589 IPR030066 GO:0005983
Gso19g0576 589 SUPERFAMILY E set domains 453 536 IPR014756 -
Gso19g0576 589 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 279 422 IPR029021 -
Gso19g0576 589 CDD E_set_AMPKbeta_like_N 456 535 - -
Gso19g0576 589 Pfam Dual specificity phosphatase, catalytic domain 298 419 IPR000340 GO:0008138|GO:0016311
Gso19g0576 589 ProSiteProfiles Dual specificity protein phosphatase domain profile. 289 448 IPR020422 GO:0006470|GO:0008138
Gso19g0576 589 Gene3D Protein tyrosine phosphatase superfamily 282 549 IPR029021 -
Gso19g0576 589 SUPERFAMILY PDZ domain-like 78 172 IPR036034 GO:0005515
Gso19g0576 589 Pfam Glycogen recognition site of AMP-activated protein kinase 456 537 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0576 Gso-Chr19 16552888 16562699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0576 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 68.374 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0576 - - gmx:100814503 1195.65