LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso19g0566	ATGGGGCGTGGGCTCCGAAGGATGAAGCAGCGGAAAGAAACAAAATCTTTGGATTTTGATGGTGGGTGTGAGGCCGATGAGGCCAAAAAAACGACCAATTTCGCCGAAAACAATGATGACGTGGCAGGGGGTTCTTCTTCTTCTTCTGATCGAGAAGGCGTGAGAAAGAAGCTTGGCGAAAAAGGTAAAAAGGATAAGGAGGATGTGAAAGAGAAGGAGATGTTAGAGGGCGATTTGATGGACAAGAAAGATGATGTTCAAGACGAAAATCGCGGTAGAAAAAGAAAGATGTTTCCGAAGGATGACGGTGAGAGTGAGGCCGATGAGGGCAAAACGGTGATCAAGTTTGCTGAAAAGAATGATGATGTGGCAGGAAGTTCTTCTTCTGCTCAAGAGGGTGGAAGGAAAAGTAAAGTGGATAAGGAAGACGTGAAAAAGAAGAAGAATAAGATATTAGAGGGCAATTTGTTGGACAAGAAAGACGAAAAGGGTGGTGAAAGTGGGGTTGATAGAAAGAGAAAGAAGCTTAAGAGTGATGAGGGTGAGATTGAAGTGCCTGTTTCTACTACTGATTCTTCACAAAACGGCGTTCAGAAACTGTATAGTCTTAGGGCGCGTAAAGACAATACACAAGAGGGGATGCTGCTGCCAAAAGTCATCAAGAGAAATTCTGATTCACCATTCATCAAGTTTGTTGAAGAGGAGTCCTTAATGTGCCATCAATGCCAGAGGAATGATAAAGGGAGGATAGTAAGGTGCACAAAATGTAAGCGGAAAAGATTTTGCTTGCCCTGTTTAAGAAATTGGTATCCTCATTTGAAAGAGGAGGATATTGCTCAGGAATGTCCTGTGTGCTGTGGTAATTGCAACTGCAAAGCATGCTTGAGATCTGATGAACCTATTAAAAAAATGAAAGGCAAAACAAATACTGATGAAGATGACAAGATTGAACACTCTATGCATTTGCTGCAAGTACTTCTTCCGTATTTAAGGCAGTTGGATGAAGAACAAATGATTGAGAATGAGATAGAAGCTAAGATGCAAGGGCTCTCGGTCTCAAAGCTAAATATAGTAAAGACAGATTATGCAAAAGACGAGCGTGTGTACTGTGACAACTGCAAAACATCAATATTTGATTACCACAGAAGCTGTACAAAATGCTCTTTTGATCTTTGTCTCATCTGTTGCCGGGAGCTTCGTAATGGGCAGCTTGTAGGTGGTGCAGATCCAATTGAGTGGGAGTTTGTCTTTCAAGGTCATGATTACTTGCATGCTCAAAAAGAAAAGGCTCTAAAGGAAAGAAAAATGGTAAAGCAAAATGCATCAAATGCTGATGCTAAGCCTGAGGTTCGTGAATGGTCAAGATGTGGGTGGCATGCAGAAAGTAATGGTAACATTCCTTGTCCAAAAGTCAATGGTGAATGTAACCATGGTTTCCTTGAACTGAGAACCATATTAGGCAAACATTTTATCACTAAGATAGTGCATAAAGCAAACAAACTAGCACAGGCATTCACTCTTCAAGATGTAGTTAAGAACCCTGACAACTTCTGTTCATGTTTGAGGCTTGATAGAAGCACAGATGTTATTTATAACAATATGAGGAAGGCTGCTTTCCGTGAAGATTCCAGTGACAACTATTTATACTGTCCTAGGGCTGTAGATCTACAGCCCAATGATTTAAGGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTCATTGTCAGCAATGTGCTTGACTGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATGCCGTCAGATAACTAACACTAACCATGATCAACATTTGGATGTGAAAGCAATTGATTGCTTAGATTGGTGTGAGGCAGTAATTAATATCCACCAATTCTTTACTGGGTATACAAAAGGTCGTCAGGATTGGCTTGGTTGGCCTCAGATATTGAAATTAAAAGATTGGCCGCCTTCTAATTTATTTGAGGAACGTTTGCCTCGTCATTGTGCTGAGTTCATATCTTCCTTGCCCTTCAAGGAATATACTGATCCTCTCAAAGGTGCTCTTAACCTTGCTGTGAAGTTGCCTGATGGTTCTCTAAAGCCAGACATGGGGCCAAAGACATATATTGCTTATGGATTTCCTCAGGAGTTTGGACGTGGTGATTCAGTGACTAAGCTTCATTGTGACATGTCTGATGCAGTAAATCTGTTGACTCATATTGCTGAAGTGAAATTAGAACCAGAGCAACTTCCTATCGTTGAGAAGTTGAAACAAAATCACTTTGAGCAAGACAAAAGGGAGCTACTAAGTGATGATCAGGATGGAGAAACTAATCATAACGTGCTTAATAATTCATCTTCTACCACAAATGCTTCAGACAAGCAAAATTGTGTACAAGTCATGGAAAATGGAGGTAACTTATGTGATGGGAAAGAAGTTGATCAGTTTTATCAACCCTCTGGTGGTATTGAGGTTGTCGTTGCTAATGAGGATGGTCTTTCGTGCGGATCAGATCTGAAAGAGATTGACAAAGTAAAAATTATACAAGAAAGTGGTTTGTTTAGGGGGGATGCTTCAGAAGGTGCTCTCTGGGATATTTTTCGGAGACAGGATGTACCTAAATTGCAGGAATATCTGAAGAAGCACTTCAGAGAGTTTAGGCATATTCATTGCTGTCCTTTAAAGCAGGTTATTCACCCCATCCATGACCAGACCTTCTATCTGACTATGGAGCATAAGAAGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTACTCAGAAGTTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATTAAGGTTGCTTTGGATTTTGTCTCTCCTGAAAATGTTGGGGAGTGCTTTCGTTTGACGGAGGAGTTTCGCACACTTCCAATAAACCACAGGTCTACTGAGGACAAATTGGAGGTGAAGAAGATGACAATATATGCTATGCAAGAAGTGATAACAAAATTAGAGAAAGCAAGGTCCAGGCAAACCATAGTTCCAAAGTAG	3048	0.4117	MGRGLRRMKQRKETKSLDFDGGCEADEAKKTTNFAENNDDVAGGSSSSSDREGVRKKLGEKGKKDKEDVKEKEMLEGDLMDKKDDVQDENRGRKRKMFPKDDGESEADEGKTVIKFAEKNDDVAGSSSSAQEGGRKSKVDKEDVKKKKNKILEGNLLDKKDEKGGESGVDRKRKKLKSDEGEIEVPVSTTDSSQNGVQKLYSLRARKDNTQEGMLLPKVIKRNSDSPFIKFVEEESLMCHQCQRNDKGRIVRCTKCKRKRFCLPCLRNWYPHLKEEDIAQECPVCCGNCNCKACLRSDEPIKKMKGKTNTDEDDKIEHSMHLLQVLLPYLRQLDEEQMIENEIEAKMQGLSVSKLNIVKTDYAKDERVYCDNCKTSIFDYHRSCTKCSFDLCLICCRELRNGQLVGGADPIEWEFVFQGHDYLHAQKEKALKERKMVKQNASNADAKPEVREWSRCGWHAESNGNIPCPKVNGECNHGFLELRTILGKHFITKIVHKANKLAQAFTLQDVVKNPDNFCSCLRLDRSTDVIYNNMRKAAFREDSSDNYLYCPRAVDLQPNDLRHFQWHWEKGEPVIVSNVLDCTSGLSWEPLVMWRACRQITNTNHDQHLDVKAIDCLDWCEAVINIHQFFTGYTKGRQDWLGWPQILKLKDWPPSNLFEERLPRHCAEFISSLPFKEYTDPLKGALNLAVKLPDGSLKPDMGPKTYIAYGFPQEFGRGDSVTKLHCDMSDAVNLLTHIAEVKLEPEQLPIVEKLKQNHFEQDKRELLSDDQDGETNHNVLNNSSSTTNASDKQNCVQVMENGGNLCDGKEVDQFYQPSGGIEVVVANEDGLSCGSDLKEIDKVKIIQESGLFRGDASEGALWDIFRRQDVPKLQEYLKKHFREFRHIHCCPLKQVIHPIHDQTFYLTMEHKKKLKEEYGIEPWTFTQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPINHRSTEDKLEVKKMTIYAMQEVITKLEKARSRQTIVPK*	1016

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso19g0566	1015	Coils	Coil	427	447	-	-
	Gso19g0566	1015	MobiDBLite	consensus disorder prediction	11	34	-	-
	Gso19g0566	1015	MobiDBLite	consensus disorder prediction	1	195	-	-
	Gso19g0566	1015	MobiDBLite	consensus disorder prediction	773	792	-	-
	Gso19g0566	1015	ProSiteProfiles	Zinc finger RING-type profile.	239	285	IPR001841	-
	Gso19g0566	1015	PANTHER	JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN	28	1000	IPR045109	GO:0032454\|GO:0033169
	Gso19g0566	1015	MobiDBLite	consensus disorder prediction	767	792	-	-
	Gso19g0566	1015	Gene3D	Cupin	550	982	-	-
	Gso19g0566	1015	Pfam	Zinc-finger domain of monoamine-oxidase A repressor R1	234	298	IPR018866	-
	Gso19g0566	1015	Pfam	JmjC domain, hydroxylase	860	956	IPR003347	-
	Gso19g0566	1015	ProSiteProfiles	JmjC domain profile.	681	973	IPR003347	-
	Gso19g0566	1015	SUPERFAMILY	Clavaminate synthase-like	559	996	-	-
	Gso19g0566	1015	SMART	cupin_9	662	973	IPR003347	-
	Gso19g0566	1015	MobiDBLite	consensus disorder prediction	134	184	-	-
	Gso19g0566	1015	MobiDBLite	consensus disorder prediction	35	49	-	-
	Gso19g0566	1015	PANTHER	-	28	1000	-	-
	Gso19g0566	1015	MobiDBLite	consensus disorder prediction	50	118	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso19g0566	Gso-Chr19	15640703	15655969	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Gso19g0566		JmjC	3.6e-15	CL0029

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso19g0566	K15601		-	gmx:100780803	2045.4