Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0561 ATGTTGTTACCAAAAAAGGAAGTAGCAGGATGTGTTTTAGAGAAGATCATGGCCTCATCTAGCTACTCTAACTCTCCCTGTGCTGCCTGCAAGTTCTTGAGAAGAAAATGCATGCCGGATTGCATTTTCTCCCCGTATTTCCCTCCAGAAGAGCCTCAGAAGTTCGCCAATGTGCACAAGATATTTGGAGCAAGCAACGTGAGCAAGCTTCTAAATGAGGTGCAGCCCCACCAGAGGGAGGATGCAGTGAACTCACTGGCCTATGAAGCCGAGGCACGGATAAAGGATCCGGTTTATGGCTGTGTTGGGGCAATTTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAGAAGGAACTTGATGCCACAAATGCTGATTTGATCCGTTATACCTGCAATGAAATGCCAACCACTCAAGATGGTAGAAGAATTATTGGTGAAGGGGGTGGTGGTGGTGGTTCCTCTCTTGGTCAATCTCCTGGTTACTATTACCCTTCTCCTTGGAACAATGATCCGCTTGGGGATGGTTATCACAGAGGTGACAATATATAA 549 0.4681 MLLPKKEVAGCVLEKIMASSSYSNSPCAACKFLRRKCMPDCIFSPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMPTTQDGRRIIGEGGGGGGSSLGQSPGYYYPSPWNNDPLGDGYHRGDNI* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0561 182 Pfam Lateral organ boundaries (LOB) domain 26 122 IPR004883 -
Gso19g0561 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 17 171 - -
Gso19g0561 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 171 - -
Gso19g0561 182 Coils Coil 105 125 - -
Gso19g0561 182 ProSiteProfiles LOB domain profile. 25 126 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0561 Gso-Chr19 14990400 14992695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0561 20 142 AS2 family AT3G27650 77.778 2.77e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso19g0561 LOB 3.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0561 - - gmx:100306630 342.043