Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0545 ATGGAGTTTGATCCAATCTTTCCAGCAGAGAAAATTCACTACCTTTCTAGTATTTTCTCTGGGATCAAACCAGAGATCCCAGCTTTTATCCCCATGTCACAAGAGAACAACAACAACACCACCTTCTGCATGTACCAAAACAATTTCAAAAACCATGATAATCACCACCCTACTGCAAACTTTTTCTCAGAGGGTTTTAATTCCTCCATCCTTACCCCATTGTTCTCTTTGTCCTCTTCTTCAGGTGACTCATCATACCCTAATGAGTGCCTCAAAGGAAGCTTTGCCAACGACAACAACTTCTACCACCCCATCATGCCTTATGCACAAAACAACACCCAAAATGAACCCATGCATGGCCCCAACAGAGCCATATGGGATTTTTCCCAGAAAATTCCCCTTCGGTGCTCTAGTGCAGGTGCAGGTGCAACTTCACAGCCTCATCAGCAGATGCAGAGGAGGAGTAATGGCAAAATTCAGCACAAGAATATGACCAACATAATCAAAGGCCAGTGGAGTGCTGAAGAGGACAGGGTCCTCGTCCAATTGGTGAAACGCTTCGGGCTCAAAAAATGGTCTCACATCGCAAGGTTGCTGAATGGAAGGGTTGGGAAACAGTGCAGGGAGCGATGGCACAACCATCTCCGGCCCAACATTAGGAAGGAGTCATGGAACGAAGAGGAGGACAGAATCCTGATCGAAGCTCACAAGGGGATTGGGAACAGGTGGGCCGAAATCGCTAGGAGAATGCCCGGCAGGACGGAGAACACCATCAAGAACCACTGGAACGCGACGAAGAGGCGCCTAAACGCCAAGAGGCTGAGGAACAAGCGCAGGAGTTCTAAGGGGCCGACGCTTCTGGAGAGTTACATAAGGCAAGTCACTGCAGAAGAAGATGCGGAAAAGGAGCTGATCAAGAACTCCATGAACAACATGAACCTGAAGGGCGAGCGTAGTAGCAACACCACCAACACCAAAACCAAATATCCGCGTCTCTTTCGAGTTCGGTACGATAGCTCAGAGGGTGGCTTCAGTTCTGAGGAGGATGAAGTTGGGCGGGGTGTGCAGCAGCTACATGGTGGTGGTGGTGCCTATGTGCCTACGATGGTAAATGCTGCTGTGGAAGATGGCACAATGGGTTATGATGTTGCGATGGAGATGGCGCCGGAGGTTCAGATGAAGAAGGAAATGGATCTCATGGAGATGATCTATAGAAAAGCTTAA 1224 0.4869 MEFDPIFPAEKIHYLSSIFSGIKPEIPAFIPMSQENNNNTTFCMYQNNFKNHDNHHPTANFFSEGFNSSILTPLFSLSSSSGDSSYPNECLKGSFANDNNFYHPIMPYAQNNTQNEPMHGPNRAIWDFSQKIPLRCSSAGAGATSQPHQQMQRRSNGKIQHKNMTNIIKGQWSAEEDRVLVQLVKRFGLKKWSHIARLLNGRVGKQCRERWHNHLRPNIRKESWNEEEDRILIEAHKGIGNRWAEIARRMPGRTENTIKNHWNATKRRLNAKRLRNKRRSSKGPTLLESYIRQVTAEEDAEKELIKNSMNNMNLKGERSSNTTNTKTKYPRLFRVRYDSSEGGFSSEEDEVGRGVQQLHGGGGAYVPTMVNAAVEDGTMGYDVAMEMAPEVQMKKEMDLMEMIYRKA* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0545 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 164 219 IPR017930 -
Gso19g0545 407 PANTHER MYB PROTEIN-RELATED 71 327 - -
Gso19g0545 407 Gene3D - 168 220 - -
Gso19g0545 407 SMART sant 168 217 IPR001005 -
Gso19g0545 407 SMART sant 220 268 IPR001005 -
Gso19g0545 407 MobiDBLite consensus disorder prediction 139 157 - -
Gso19g0545 407 SUPERFAMILY Homeodomain-like 166 262 IPR009057 -
Gso19g0545 407 CDD SANT 223 266 IPR001005 -
Gso19g0545 407 ProSiteProfiles Myb-like domain profile. 164 215 IPR001005 -
Gso19g0545 407 PANTHER MYB DOMAIN PROTEIN 100-RELATED 71 327 - -
Gso19g0545 407 Gene3D - 222 286 - -
Gso19g0545 407 Pfam Myb-like DNA-binding domain 172 229 - -
Gso19g0545 407 CDD SANT 172 215 IPR001005 -
Gso19g0545 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 220 270 IPR017930 -
Gso19g0545 407 ProSiteProfiles Myb-like domain profile. 216 266 IPR001005 -
Gso19g0545 407 MobiDBLite consensus disorder prediction 138 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0545 Gso-Chr19 13635880 13638483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0545 165 294 MYB Transcription Factor Family AT4G18770 66.923 1.31e-60 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso19g0545 Myb_DNA-bind_6 3.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0545 K09422 - gmx:100793032 797.349