Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0540 ATGGATAAAAAACAACAGTGTAAGACGTCTCAAGATCCTGAAGTGAGAAAAGGGCCTTGGACAATGGAAGAAGACTTGATCTTGATGAACTATATTGCAAATCATGGGGAAGGTGTTTGGAACTCTTTGGCCAAAGCTGCTGGTCTCAAACGTAACGGAAAGAGTTGCCGGCTAAGGTGGCTAAATTACCTCCGTCCTGATGTTAGAAGAGGGAATATTACACCCGAGGAACAACTTTTGATTATGGAGCTCCACGCAAAGTGGGGAAACAGGTGGTCCAAAATTGCCAAGCATCTACCTGGAAGGACTGATAATGAGATCAAGAACTATTGGAGGACAAGGATCCAGAAGCACATCAAGCAAGCTGAGAACTTTCAGCAACAGAGTAGTAATAATTCTGAGATAAATGATCACCAAGCTAGCACTAGCCATGTTTCCACCATGGCTGAGCCCATGGAGATGTATTCTCCACCCTGTTATCAAGGAATGTTAGAGCCATTTTCAACTCAGTTCCCTACAATTAATCCTGATCAATCCAGTTGTTGTACCAATGACAACAACAACATTAACTATTGGAGCATGGAGGATAGCTGGTCAATGCAATTACTGAACGGTGATTAA 621 0.4267 MDKKQQCKTSQDPEVRKGPWTMEEDLILMNYIANHGEGVWNSLAKAAGLKRNGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAENFQQQSSNNSEINDHQASTSHVSTMAEPMEMYSPPCYQGMLEPFSTQFPTINPDQSSCCTNDNNNINYWSMEDSWSMQLLNGD* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0540 206 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Gso19g0540 206 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Gso19g0540 206 SMART sant 16 66 IPR001005 -
Gso19g0540 206 SMART sant 69 117 IPR001005 -
Gso19g0540 206 CDD SANT 74 113 IPR001005 -
Gso19g0540 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Gso19g0540 206 CDD SANT 19 64 IPR001005 -
Gso19g0540 206 Gene3D - 74 145 - -
Gso19g0540 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Gso19g0540 206 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Gso19g0540 206 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 203 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso19g0540 206 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Gso19g0540 206 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Gso19g0540 206 Gene3D - 17 69 - -
Gso19g0540 206 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 4 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0540 Gso-Chr19 13370311 13374035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0540 1 206 MYB Transcription Factor Family AT3G01530 56.881 6.95e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso19g0540 Myb_DNA-binding 3.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0540 K09422 - gmx:778048 442.965