Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0516 ATGTCGCGTGCGATGTGCAACCCAGCAATGGTGAGTAGGAGTGTTCTAGGGTCCCAAACGAGTTCAAAATCGGTGACAGAGACAATGAGTGGTTTCCACGAGTTTGTGATCAAGGGTTACTCACTAACGAAAGGAATGGGCATTGGGAAATACATCGTGAGTGAGACTTTCATAGTGGGAGGGTTCCAATGGGCCATATACTTTTTCCCTGATGGTAGGGACCCCAAAGATAATGCCGCTTATGTCTCTGTCTTTGTTGCACTCCATTCCAAGAGCACCAACGTTCGTGCGTTGTTCGATCTCACGTTGCTCGACCTATGCAAGAAAGGAGAGCACAAGGTTCATAGCCACTTCAGTCACTCCCTCACGATTGGGCCTTACACTCTCATAAACCATGGCAGCATGTGGGGCTATACGCGGTTTTTCAAACGGAGACACCTTGAGACGTCAAATTTTCTCAAGGATGACTGCTTGAAGATAAATTGCACTATTGCGGTTTTAGTGTCGTCCATAGATTCTTCTCAGTTAAACACAATACAGGTTCCTGAATCTGATATTGGTGAACATTTTGGGATGTTGTTAGAGGATGAGGAATCATTTGATGTTACTTTCTCGGTTGGTGGAGAAAGGTTTCATGCTCATAAGCTTGTTTTGGCAGCTCGATCAACCATGTTTGAAACACAATTTTTTAATGCGATGAAGAAGGATGATCAGGAGATAGTTGTTATTGACATGGAACCTAAGGTTTTCAAGGCTTTACTTCATTTTGTTTATAGAGACACTCTTTTGGAAGATGAAGAGCTCTTTATGTTGGATTCGTCATTCTTTCCTTCGTTGTCTGAATCATTTATAGCAAAGTTGTTAGCTGCTGGAGAAAAGTATGGTTTGCCAAGACTAATGTTGATGTGTGAATCTATACTTTGTAAAGAAATATCTGTAGATTCTGTTGCCTATATTTTTGCTCTTGCTGATCGTTATTGTGCTACCCACTTGAAGTCCATCTGTCAAAAAGTTTCTGCTGAAAACTTTGATGCCGTGATGCATTCTGATGGTTTTGAGTATCTTAAGAAAAATTGCCCATTACTGCAATCAGAACTGCTAAAGACTGGAGTAGGATGCGAGAAAGAATTTAGTTGA 1137 0.4142 MSRAMCNPAMVSRSVLGSQTSSKSVTETMSGFHEFVIKGYSLTKGMGIGKYIVSETFIVGGFQWAIYFFPDGRDPKDNAAYVSVFVALHSKSTNVRALFDLTLLDLCKKGEHKVHSHFSHSLTIGPYTLINHGSMWGYTRFFKRRHLETSNFLKDDCLKINCTIAVLVSSIDSSQLNTIQVPESDIGEHFGMLLEDEESFDVTFSVGGERFHAHKLVLAARSTMFETQFFNAMKKDDQEIVVIDMEPKVFKALLHFVYRDTLLEDEELFMLDSSFFPSLSESFIAKLLAAGEKYGLPRLMLMCESILCKEISVDSVAYIFALADRYCATHLKSICQKVSAENFDAVMHSDGFEYLKKNCPLLQSELLKTGVGCEKEFS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0516 378 Gene3D - 310 375 - -
Gso19g0516 378 SMART BTB_4 200 311 IPR000210 GO:0005515
Gso19g0516 378 ProSiteProfiles MATH/TRAF domain profile. 30 164 IPR002083 GO:0005515
Gso19g0516 378 Gene3D Potassium Channel Kv1.1; Chain A 176 305 IPR011333 -
Gso19g0516 378 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 13 370 IPR045005 GO:0016567
Gso19g0516 378 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 31 167 IPR008974 GO:0005515
Gso19g0516 378 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 13 370 - -
Gso19g0516 378 ProSiteProfiles BTB domain profile. 200 266 IPR000210 GO:0005515
Gso19g0516 378 Pfam BTB/POZ domain 193 309 IPR000210 GO:0005515
Gso19g0516 378 SUPERFAMILY POZ domain 179 309 IPR011333 -
Gso19g0516 378 CDD MATH 31 164 IPR002083 GO:0005515
Gso19g0516 378 CDD BTB_POZ_BPM_plant 186 308 - -
Gso19g0516 378 SUPERFAMILY TRAF domain-like 27 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0516 Gso-Chr19 11660406 11662433 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gso19g0516 BTB 2.6e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0516 K10523 - gmx:100797106 753.821