Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0512 ATGTCGCATGCGATGTGCAACCCAGCAATGGTGAGTAGGAGTGTTCTAGGGTCCCAAACGAGTTCAAAATCGGTGACAGAGACAATGAGTGGTTCCCACGAGTTTGTGATCAAGGGTTACTCACTAACGAAAGGAATGGGCATTGGGAAATACATCGTGAGTGAGACTTTCATAGTGGGAGGGTTCCAATGGGCCATATACTTTTTCCCTGATGGTAGGGACCCCAAAGATAATGCGGCTTATGTCTCTGTCTTCGTTGCACTCCAATCCAAGAGCACCAACGTTCGTGCGTTGTTCGATCTCACGTTGCTCGACCTATGCAAGAAAGGAGAGCACAAGGTTCATAGCCACTTCAGTCACTCCCTCACGATTGGGCCTTACACTCTCATAAACCATGGCAGCATGTGGGGCTATACGCGGTTTTTCAAACGGAGACACCTTGAGACGTCAATTTTTCTCAAGGATGACTGCTTGAAGATAAATTGCACTATTGCGGTTTTAGTGTCGTCCATAGATTCTTCTCAGTTAAACACAATACAGGTTCCTGAATCTGATATTGGTGAACATTTTGGGATGTTGTTAGAGGATGAGGAATCATTTGATGTTACTTTCTCGGTTGGTGGAGAAAGGTTTTATGCTCATAATCTTGTTTTGGCAGCTCGATCAACCATGTTTGAAACTCAATTTTTTAATGCGTTGAAGAAGGATGATTAG 714 0.4426 MSHAMCNPAMVSRSVLGSQTSSKSVTETMSGSHEFVIKGYSLTKGMGIGKYIVSETFIVGGFQWAIYFFPDGRDPKDNAAYVSVFVALQSKSTNVRALFDLTLLDLCKKGEHKVHSHFSHSLTIGPYTLINHGSMWGYTRFFKRRHLETSIFLKDDCLKINCTIAVLVSSIDSSQLNTIQVPESDIGEHFGMLLEDEESFDVTFSVGGERFYAHNLVLAARSTMFETQFFNALKKDD* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0512 237 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED 11 232 - -
Gso19g0512 237 SUPERFAMILY TRAF domain-like 27 168 - -
Gso19g0512 237 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 11 232 IPR045005 GO:0016567
Gso19g0512 237 SUPERFAMILY POZ domain 179 235 IPR011333 -
Gso19g0512 237 CDD MATH 31 164 IPR002083 GO:0005515
Gso19g0512 237 Gene3D Potassium Channel Kv1.1; Chain A 167 237 IPR011333 -
Gso19g0512 237 ProSiteProfiles MATH/TRAF domain profile. 30 164 IPR002083 GO:0005515
Gso19g0512 237 ProSiteProfiles BTB domain profile. 200 237 IPR000210 GO:0005515
Gso19g0512 237 Pfam BTB/POZ domain 193 232 IPR000210 GO:0005515
Gso19g0512 237 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 29 166 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0512 Gso-Chr19 11486304 11487953 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gso19g0512 BTB 7.6e-09 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0512 K10523 - gmx:102661682 470.314