Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0509 ATGGCATTGGTGTCTCCGAGGACAACATGGCCAAGCCGTAGGTCGATGTCTCCTGGGTCTAGTACGAGGGCAACACCTGCAACATGCACCTCCTCCACCTCTCCAAGGCCGTGCGTGACGGCATTGCCGCCGCCGGCATGGTTCCCTTCTGCTTCAACACTATTGGCGTCAGCGATGCCATCTCCATGGGCACTCGTGGCATGTGCTAAAGCCTCCAGTCCAGGGACCTCATTGCCGACAACATCGAGACCGTCATGGCAGCGCAGTGATGCCAGGTACTATCATTGCCATGAGCCATGGGTAGTGCTGATGGCGAGGGAGAAGGTTCAGATTAAGAAGATTGACAACGCCACTGCGAGGCAGGTCACATTCTCCAAGCGTCGGAGAGGGCTCTTCTAG 399 0.5714 MALVSPRTTWPSRRSMSPGSSTRATPATCTSSTSPRPCVTALPPPAWFPSASTLLASAMPSPWALVACAKASSPGTSLPTTSRPSWQRSDARYYHCHEPWVVLMAREKVQIKKIDNATARQVTFSKRRRGLF* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0509 132 ProSiteProfiles MADS-box domain profile. 104 132 IPR002100 GO:0003677|GO:0046983
Gso19g0509 132 SUPERFAMILY SRF-like 104 132 IPR036879 GO:0003677|GO:0046983
Gso19g0509 132 PRINTS MADS domain signature 106 126 IPR002100 GO:0003677|GO:0046983
Gso19g0509 132 PRINTS MADS domain signature 126 132 IPR002100 GO:0003677|GO:0046983
Gso19g0509 132 MobiDBLite consensus disorder prediction 1 36 - -
Gso19g0509 132 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 113 132 IPR002100 GO:0003677|GO:0046983
Gso19g0509 132 MobiDBLite consensus disorder prediction 8 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0509 Gso-Chr19 11275484 11278713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0509 104 132 MADS-box Gene Family AT2G22540 93.103 3.60e-14 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso19g0509 SRF-TF 3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0509 - - gsj:114397913 258.07