Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0498 ATGGCTAGGAGCTGGCTTATTGACATTGGAGGATTTGCAAAGAAAGTGAAAAGCACTACTCTATCTTCAGCTGATCAAATCAAAGATTGTGGGGCATATCGTGAATGTCCAAACTGTTCTTATCATATTGATAACAGTGATGTTTCTACTGAGTGGCCTGGCTTTCCTCTTGGTGTAAAGTTTGATCCTTCTGATGTAGAACTCTTAGAACATTTAGCAGCAAAATGTGGCATTGGAAACACTCAGCAACACATGTTTATCAATGAGTTCATCCCAACACTGGAAGGAGACCAAGGAATTTGCTACACACATCCGGAAAATCTTCCAGGTGCTAAGAAAGATGGGAGTTATGTCCATTTCTTTCACAGAACAACCAATGCATATGCTACTGGTCAACGAAAGCGTCGAAAGATTCATCATCAACAGGGTTTGACTGAAGAGCATGTGCGCTGGCATAAGACTGGCAAGACGAAAGCTATAATAGAAGATGGAGCACATAAGGGCTTTAAGAAGATCATGGTTCTCTATGTAAGATCCAGTGAGAATGGGTCCAGGTCTTATAAATCCAACTGGGTAATGCATCAGTACCATCTAGGGACTGTAGAAGAAGAAAAGGAAGGTGAATATGTGGTTTCAAAAATTTTCTGTCAACAGCAAAAGCAGACTGAGAAAAATGAGGGCAATCCAATGGCTGAAGATCCTGACAATATAATATCACGAACAGGTCCTAGAACTCCGAAACCAAATCCCCCCAATCCACCTCGTGCGGGAAAATCTGTTGATTGTGATGATAACATTGATGAAACTGTACTTCTGTCTTCTGCCCTGGATACCAAGACAATCCCTGGAGAATCACATGCTCCACAATCAGATATTCAGGATCAAGACTTTACTGGCAATGCTGCATGGCTAGCTGGCGAATCGCAGGCTGAGGAAAGCACCAAATATGATGGCTGTGACGACATCTTATTGTGCAAGGAGATCTTAGATTCTTCTGCTATATTAAATGACCCTGGATTGGACTCCACCAATCTTGAAGACATTGCAGGCTATGCTACCCAAAGGGCTAGAAATGATAATGAATCTTGCGGAATTTCTGTTCTGGATTCACTGGAATTGGATACTCCTGATTTTGATCTTTCTAGTTTGTATTTTTGTTCTCAAGACAGTATCCTTGATTGGATGGACAGGTTATGA 1197 0.4152 MARSWLIDIGGFAKKVKSTTLSSADQIKDCGAYRECPNCSYHIDNSDVSTEWPGFPLGVKFDPSDVELLEHLAAKCGIGNTQQHMFINEFIPTLEGDQGICYTHPENLPGAKKDGSYVHFFHRTTNAYATGQRKRRKIHHQQGLTEEHVRWHKTGKTKAIIEDGAHKGFKKIMVLYVRSSENGSRSYKSNWVMHQYHLGTVEEEKEGEYVVSKIFCQQQKQTEKNEGNPMAEDPDNIISRTGPRTPKPNPPNPPRAGKSVDCDDNIDETVLLSSALDTKTIPGESHAPQSDIQDQDFTGNAAWLAGESQAEESTKYDGCDDILLCKEILDSSAILNDPGLDSTNLEDIAGYATQRARNDNESCGISVLDSLELDTPDFDLSSLYFCSQDSILDWMDRL* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0498 398 ProSiteProfiles NAC domain profile. 55 217 IPR003441 GO:0003677|GO:0006355
Gso19g0498 398 SUPERFAMILY NAC domain 39 217 IPR036093 GO:0003677|GO:0006355
Gso19g0498 398 MobiDBLite consensus disorder prediction 220 262 - -
Gso19g0498 398 Gene3D NAC domain 64 222 IPR036093 GO:0003677|GO:0006355
Gso19g0498 398 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 1 396 - -
Gso19g0498 398 Pfam No apical meristem (NAM) protein 56 198 IPR003441 GO:0003677|GO:0006355
Gso19g0498 398 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 396 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0498 Gso-Chr19 10262180 10266900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0498 33 219 NAC Transcription Factor Family AT4G28500 51.852 3.66e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso19g0498 NAM 4.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0498 - - gmx:100780442 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0023 5 190596 195353 Gso19g0498 19 10262180 10266900 GST