Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0490 ATGGGAAGACAGCCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTTATGAATTTCATCCTCAATAATGGTATTCACTGCTGGAGAACAGTTCCTAAGCTAGCAGGCTTGCTAAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGATTTACTGAAATGGAAGAGGATCAAATTATACAGCTACATTCATGTCTAGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCTGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAAAATCAAGAAGAGGTTGAAGCTCCTAGGTTTGGACCCTTTAACCCTGAAGCCATCTGAGCAAAAGGAAAAGTCTGTTGATGACAAAAAAAATATAGAATTACAACCAAACACTTCAAAAGGGTCTGAACAAGGTGTAGAGAACAAGTCCTTAGATATGCATAGCACAAGCGAAGTGCCAAAAACAGAAGGGAAAATAGAAGAAAACAAGGTGACTTGGGATGATACCACTGGATTTTTCAACAATTATGAAATGTTGTGCTCACAGTTGGACTTGGGATCATGGATGAGCCAAGAAACCAAAACCAGCACTAGTTCTTATTGTAGTTCTTCTTTCTCACTTGATGATTCTAGCAACCTTTCTGTGGGTGAATCCTCTTACCTTCAGGAAAATTCCTTACAACAATGGGTTGATGGTTTGGATTCCATTTTGTCATGGGATAGCTTCAATCCTCTTGAGAAAGATTTTCTCTTCTTGGATAATAGTCAATGA 822 0.3966 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSCLGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKLLGLDPLTLKPSEQKEKSVDDKKNIELQPNTSKGSEQGVENKSLDMHSTSEVPKTEGKIEENKVTWDDTTGFFNNYEMLCSQLDLGSWMSQETKTSTSSYCSSSFSLDDSSNLSVGESSYLQENSLQQWVDGLDSILSWDSFNPLEKDFLFLDNSQ* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0490 273 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso19g0490 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso19g0490 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso19g0490 273 CDD SANT 16 61 IPR001005 -
Gso19g0490 273 SMART sant 13 63 IPR001005 -
Gso19g0490 273 SMART sant 66 114 IPR001005 -
Gso19g0490 273 PANTHER MYB DOMAIN PROTEIN 40 2 251 - -
Gso19g0490 273 MobiDBLite consensus disorder prediction 164 178 - -
Gso19g0490 273 MobiDBLite consensus disorder prediction 129 178 - -
Gso19g0490 273 MobiDBLite consensus disorder prediction 129 144 - -
Gso19g0490 273 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 251 - -
Gso19g0490 273 Gene3D - 69 149 - -
Gso19g0490 273 Gene3D - 11 67 - -
Gso19g0490 273 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Gso19g0490 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso19g0490 273 CDD SANT 70 110 IPR001005 -
Gso19g0490 273 MobiDBLite consensus disorder prediction 145 163 - -
Gso19g0490 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso19g0490 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0490 Gso-Chr19 9530549 9532458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0490 1 159 MYB Transcription Factor Family AT5G16600 68.125 1.60e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso19g0490 Myb_DNA-binding 8.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0490 K09422 - gmx:100819471 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0632 5 8062408 8064793 Gso19g0490 19 9530549 9532458 GST