Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0464 ATGGGTCGTGCAAGAATAACCTTGAAACATATCTCAAATGAGAGATCTCGCAAGACGGTGTCCAAGCAGAGAAAGAAAGGGCTAATTGAGAAAGTCTCTAAATTTTCCACCATGTTTGGAGATGAAGCATGTTTGATTGTGTATGATGATGAAAATGGTGATGTTGGACCTGTGACTTGGCCTCAACACCCCACACTGATACACGCCATCATTCAAAAGTATTATGAGATTCAATCAAAGAATGAGAGGCCTCAAGAGACTTTTGTTATTCAAGATTTTTTTGCAAATAGGAAAAAGATGGTTGAGGCTGATATTTCTAAAGTGCAAAAACAGATTGCCAGCATCAAGTATCCAACTTGGGATCAAAGTATCAGAAACATCAAAGAGGAGAAATTGAGGGGCCTCATTGCTCATGTGGATTCTAAGATTAGAGGTTATGATCATAGAATTAACATGTTGAAAAACAAGCATCAGAGTGAAGCCAAGTTCAGTTTCGTGCAAAACATGGCTCAAGCAAGTGGTTTCTCCAACCATCCAAGTCAAATCCTCCTTAATGATGACAATAGGAGGGTGAATTTTACAAATTCAATGGATCAGTTTGATGGAGCTTGTAATTATGGAATTAATAATATGATGAGAAACATGCAACAAGGTGATGCTTGTTTTAGTTTTGTGCCAAACATGGCTCAGGAAAGTTCTAATGCTACCTCCTCACATGTCTCACATCCAAGCCAACTCAATTGCTTGCAAAACATTTCTCAAAGCCAACCTGTGCTTGAAGCTTTAAAGCCTCTTAGTGATAAGAATGAGATAGTAGATTCTAGTAATCAAGTTGATGTGCCTCTGTATTCAACTAATCAACTTGGTGAGTCTATAGACTAG 882 0.3821 MGRARITLKHISNERSRKTVSKQRKKGLIEKVSKFSTMFGDEACLIVYDDENGDVGPVTWPQHPTLIHAIIQKYYEIQSKNERPQETFVIQDFFANRKKMVEADISKVQKQIASIKYPTWDQSIRNIKEEKLRGLIAHVDSKIRGYDHRINMLKNKHQSEAKFSFVQNMAQASGFSNHPSQILLNDDNRRVNFTNSMDQFDGACNYGINNMMRNMQQGDACFSFVPNMAQESSNATSSHVSHPSQLNCLQNISQSQPVLEALKPLSDKNEIVDSSNQVDVPLYSTNQLGESID* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0464 293 SUPERFAMILY SRF-like 1 78 IPR036879 GO:0003677|GO:0046983
Gso19g0464 293 PANTHER PROTEIN, PUTATIVE-RELATED 3 286 - -
Gso19g0464 293 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Gso19g0464 293 PANTHER MADS BOX PROTEIN 3 286 - -
Gso19g0464 293 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 53 IPR002100 GO:0003677|GO:0046983
Gso19g0464 293 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Gso19g0464 293 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0464 Gso-Chr19 8499195 8500076 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0464 1 149 Type I MADS-box Gene Family AT5G55690 31.373 8.27e-19 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso19g0464 SRF-TF 2.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0464 - - gmx:100806649 590.882