Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0459 ATGATAAATACTCAACTTCACGATCAACGCGTTGTCCTCATTACCCAAGACTCGTTTTATCACTCATTGAGCGACAAGATGTTGCAGAAAGTTAATGAGTATAATTTTGATCATCCTGATGCCTTTGATACAAAGCTTTTGCTTTCAACATTGGAGAAATTAAAATGTGGACAACCTGTTACTATACCAAATTATGATTTCAATTCCCATAAGAGAATTGAAGCTGGACGTCAGGTTCAACCTGCAAATATAATAGTTTTAGAAGGGATATTAGTTCTTCATGATTCTGGTGTTCGTAATCTTTTGAACATGAAGATCTTTGTTGATGAAGATTCTGATGTGCGCCTTACACGAAGGATGCAACGCCTTGCTATTGAGCGTGGGAGGAATATTGAGAATGTTTTGGATCAATATTCCAGATTTGTAAAGCCAAGTTTTGAAGATTTTGTATTGCCAACTAAAAAGTATGCTGATATTATCATCCCGAGTGGAGGAGATAATGATGTTGCCATTGACTTAATAGTACAAAACATACGCATGAAGCTTGGCCAACATGATTTGTGTAAAATATATCCCAATATTTTTGTTATATGTTCAACATTTCAGATAAAGGGAATGCACACTCTTATCCGAGATGTTAAGACAACAAAGCATGACTTTGTCTTCTATTCAGATCGTCTTATTAGACTGGTTGTCGAGCACGGATTGGGTCATCTTCCTTTTTCTGAAAAACAGGTGATAACACCAACAGGATCTGTATACTCTGGTGTAATTTTCTGTAGTAGGTTGTGCGGAGTATCAGTCATTAGAAGTGGAGAAAGCATGGAAAATGCATTAAGAGCGTGTTGTAAGGGAATCAAAATTGGTAAAATCCTTATTCATGGGCATGGCACAAATGGTCGACAGTTAATCTATGAGAAGCTACCAAAAGATATTGCAAGTCGTCATGTGTTGCTACTCGATCCAGTTTTGGCCACAGGAAACTCTGCAGTCAAAGCTATCTCTCTGCTTCTCAACAAAGGTGTATCAGAATCTAACATTATATTTCTAAATTTAGTAGCATCACCACAAGGAATAAATGCAGTTTGTGAGAGATTTCCAATGATTAAACTTGTGACATCAGAGATTGATGCATCACTGAATGAGAAATCTCATGTGATCCCTGGCCTAGGGCAGTTTGGTGATCGTTACTTTGCGACTGATGATTAG 1209 0.3739 MINTQLHDQRVVLITQDSFYHSLSDKMLQKVNEYNFDHPDAFDTKLLLSTLEKLKCGQPVTIPNYDFNSHKRIEAGRQVQPANIIVLEGILVLHDSGVRNLLNMKIFVDEDSDVRLTRRMQRLAIERGRNIENVLDQYSRFVKPSFEDFVLPTKKYADIIIPSGGDNDVAIDLIVQNIRMKLGQHDLCKIYPNIFVICSTFQIKGMHTLIRDVKTTKHDFVFYSDRLIRLVVEHGLGHLPFSEKQVITPTGSVYSGVIFCSRLCGVSVIRSGESMENALRACCKGIKIGKILIHGHGTNGRQLIYEKLPKDIASRHVLLLDPVLATGNSAVKAISLLLNKGVSESNIIFLNLVASPQGINAVCERFPMIKLVTSEIDASLNEKSHVIPGLGQFGDRYFATDD* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0459 402 Pfam Phosphoribulokinase / Uridine kinase family 12 170 IPR006083 GO:0005524|GO:0016301
Gso19g0459 402 CDD UMPK 1 179 IPR000764 -
Gso19g0459 402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 174 IPR027417 -
Gso19g0459 402 SUPERFAMILY PRTase-like 184 400 IPR029057 -
Gso19g0459 402 Pfam Uracil phosphoribosyltransferase 199 400 - -
Gso19g0459 402 Gene3D - 1 184 IPR027417 -
Gso19g0459 402 PRINTS Uridine kinase signature 12 23 - -
Gso19g0459 402 PRINTS Uridine kinase signature 57 72 - -
Gso19g0459 402 PRINTS Uridine kinase signature 113 123 - -
Gso19g0459 402 PRINTS Uridine kinase signature 127 138 - -
Gso19g0459 402 PRINTS Uridine kinase signature 149 162 - -
Gso19g0459 402 PANTHER URIDINE KINASE 1 398 - -
Gso19g0459 402 CDD PRTases_typeI 263 373 IPR000836 -
Gso19g0459 402 Gene3D - 185 400 IPR029057 -
Gso19g0459 402 PANTHER URIDINE KINASE-LIKE PROTEIN 5 1 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0459 Gso-Chr19 8369389 8378978 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0459 1 402 PRT Gene Family AT3G27440 74.627 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0459 K00876 - gmx:100803453 774.622