Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0440 ATGGCCACTGAACAGAATGTTTCCTTCCAATTCGAAGGTCTTTGGGTCGTAGCGGTTGATGATGACACCACTATTCTTGAAATCATTAAACAAATGGGTTTTAAATGCCATTATCGTGTTGCCACATTCTCTGATGCCCCAGATGCTTTGAATTATGTTCTGGAGAATAAAGATCGCATTGATGTGATACTCGTTGATGTTCACTTGCCAAATATGGATGGCTATGAATTCCTTAAGCATATCAATAAGGAAATTGATATCCCTGTCATCATCATGTCTGTTGATGGTTCTACGAGTGCTGTGAGGAAGGCTATTACACATGGGGCATGTGATTATTGGACCAAGCCTTTCAGTGAGAACCAATTCAAGATTATGTGGAAGCATGTTGCTATGAAAGCCTGGAATGAAAAGAAGCTACAAAAAAAAGATTTTTCTGAATTTGCTTCTTCTGTTCTTGATGCAAACTTGAAGGACCAAAAAGAGATCAGTTCCAATTCCAAAGAATCTGATGTTGATGATTGTGATGCACAACCAAAGAAGCCCCGTATAGCATGGAAAGGAGAACTGCATTGCCAATTTGTCAAGGCAGTGATGCATATTGGGCTTGACAAGGCACAGCCAAAGAAGATTCTTGAAGTGATGAACATTCCTGGTTTGACAAAAGACCATGTTGCCAGTCATTTGCAGAAATATAGATTTGATTTGAAGAAATCTAATGAAGTGGCTGTGCAACAGAATGAGATGCAATTGCCAAACAGTATACAATCAACAGAACCTATTGATTGGTTTAATCCTGAGGGTTGGACCAGTCAACCTGATGAATCTATCTTGGAAAGTGTTTCTGTTCAATCTCAGAATCAGCAACAAGGAGGAGGATCTTTGCATGTCTTGCCACCACCACTAGATGGATTTCGAATTCAAACAGATTGGTGTAATATGAATTTCTGA 948 0.3935 MATEQNVSFQFEGLWVVAVDDDTTILEIIKQMGFKCHYRVATFSDAPDALNYVLENKDRIDVILVDVHLPNMDGYEFLKHINKEIDIPVIIMSVDGSTSAVRKAITHGACDYWTKPFSENQFKIMWKHVAMKAWNEKKLQKKDFSEFASSVLDANLKDQKEISSNSKESDVDDCDAQPKKPRIAWKGELHCQFVKAVMHIGLDKAQPKKILEVMNIPGLTKDHVASHLQKYRFDLKKSNEVAVQQNEMQLPNSIQSTEPIDWFNPEGWTSQPDESILESVSVQSQNQQQGGGSLHVLPPPLDGFRIQTDWCNMNF* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0440 315 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 180 233 IPR006447 GO:0003677
Gso19g0440 315 Gene3D - 177 238 - -
Gso19g0440 315 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 286 IPR045279 GO:0009736
Gso19g0440 315 SMART REC_2 14 126 IPR001789 GO:0000160
Gso19g0440 315 Pfam Response regulator receiver domain 16 122 IPR001789 GO:0000160
Gso19g0440 315 SUPERFAMILY CheY-like 13 132 IPR011006 -
Gso19g0440 315 SUPERFAMILY Homeodomain-like 177 237 IPR009057 -
Gso19g0440 315 CDD REC_typeB_ARR-like 16 130 - -
Gso19g0440 315 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 11 286 - -
Gso19g0440 315 Gene3D - 15 147 - -
Gso19g0440 315 ProSiteProfiles Response regulatory domain profile. 15 130 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0440 Gso-Chr19 7955166 7958371 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0440 1 245 Response Regulator Gene Family AT4G31920 40.637 4.27e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso19g0440 Response_reg 1.6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0440 - K14491 gsj:114399361 639.417