Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0422 ATGGCCACATACCCCACTAAGGAGAAGGTTAACTTTCATCCATTCCCAGAAGGTCTTACGGTCCTTGCAGTTGATGATGACCACAATGTTCTTGTATTCATTAAAAGAATGTGTATTCAATGGAATTATCGCGTTATTGCATTCTCTGATGCCCCATCTGCTTTGAATTTTGTGCGGGAGAAAAAAGGTTGCAATATTGATGTGATACTCACTGAAGTTCATATGGCAAATATGGATGGCTATGAATTCCTTAAGCATGCCACTAAGGAAATTAATGTTCCTATTATCATGATGTCTCATGATAATGCTACGACTACGAGTGCTTTAATGGAAGCTGTTAAACATGGGGCTTGTGATTTTTGGATTAAGCCTTTGAATGAAAAACAATTCAGGATATTGTGGACGCAAGTTGCTAGGAAAATGTGGAATGAAAAGATGCTAGCAAAAACAGATGATTCTTCTGTTCATGGTACTAGAGTGATGAATACAGAAAAGAACAGCTCAACCCCACCAAAGAAGCCCCGTTTAGTGTGGCAAGGAGAATTGCAACAGCGATTTGTCAGGGCTATAATGCATCTTGGGCTTGATAAGGCACAACCAAAGAGGATTCTTGAAGTGATGAATGTTCCCGGTTTGACAAAAGAGCATGTAGCTAGTCATTTGCAGAAATATAGAGTTAATTTGAAGAAATCTAATAAAATGATCACTGCGCATCAAGAGAATGAGATGCAAATGCAATTACCAAACAATATAGAATCCAGGGGCATGGTAGGCGCATCTAGCATTTTTCCCTATGCAGTCCTTCATCCTGAAGAACAATGGCCTAACTATTACCATCTTGAAGAACAACAAGGTGTGCCATATATAGCAAAATATCCTTCTAACATGATCAATAATGCCAAGAATTTTGCTCAGCCAATAATGACAGTAGATGATGCACCTATATGTGGAGTATTGCCCCAGTCTAATACAGTGACAGCCAACAATGCATTGATGCATCCAGATATGTATGTAGCAGCAGCAGCATCATCAGAGGCAGCAAACAGGTTGTCCTTTACAGATACTTTTATTACAGATAAGCTTGGTGTCTAA 1092 0.3919 MATYPTKEKVNFHPFPEGLTVLAVDDDHNVLVFIKRMCIQWNYRVIAFSDAPSALNFVREKKGCNIDVILTEVHMANMDGYEFLKHATKEINVPIIMMSHDNATTTSALMEAVKHGACDFWIKPLNEKQFRILWTQVARKMWNEKMLAKTDDSSVHGTRVMNTEKNSSTPPKKPRLVWQGELQQRFVRAIMHLGLDKAQPKRILEVMNVPGLTKEHVASHLQKYRVNLKKSNKMITAHQENEMQMQLPNNIESRGMVGASSIFPYAVLHPEEQWPNYYHLEEQQGVPYIAKYPSNMINNAKNFAQPIMTVDDAPICGVLPQSNTVTANNALMHPDMYVAAAASSEAANRLSFTDTFITDKLGV* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0422 363 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 173 226 IPR006447 GO:0003677
Gso19g0422 363 ProSiteProfiles Response regulatory domain profile. 20 138 IPR001789 GO:0000160
Gso19g0422 363 Gene3D - 170 231 - -
Gso19g0422 363 SMART REC_2 19 134 IPR001789 GO:0000160
Gso19g0422 363 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 273 IPR045279 GO:0009736
Gso19g0422 363 CDD REC_typeB_ARR-like 21 138 - -
Gso19g0422 363 SUPERFAMILY CheY-like 17 144 IPR011006 -
Gso19g0422 363 SUPERFAMILY Homeodomain-like 171 230 IPR009057 -
Gso19g0422 363 Coils Coil 221 241 - -
Gso19g0422 363 Gene3D - 15 145 - -
Gso19g0422 363 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 14 273 - -
Gso19g0422 363 Pfam Response regulator receiver domain 21 130 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0422 Gso-Chr19 7546736 7563838 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0422 15 230 Response Regulator Gene Family AT4G31920 36.364 6.00e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso19g0422 Response_reg 2.1e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0422 - - gmx:102662773 711.449