Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0420 ATGCCAAATATGGATGGCTTTCAATTCCTTCATCGTGTGGGCAAGGAGATTAATGTTCCTGTTATCATGATGTCTCATGATGATGCTACGAGTGCTCTGATGAAGGCTGTTACACATGGGGCTTCTGATTATTGGATTAAGCCTCTGCATCAAAACCAATTCAGGATTTTGAGGAAGCTTGTTGCTAGAAAACTCCGGATTGAAAATAATCCACCAAGAAAAGATAATTCTGATTTTGCTTCTTTTATTGTTGATGCAACAATGAGCGTCCCAAAAAAGAGAAGCTCCAATTCCAAAGAATTTGATTTTTATGAATCGGATGATTGTTATGCACCCCCAGCAAAGGAGCACCGTGTAGTATGGTCAGAAGAACTGCATCAAGAATTTGTCAATGCTGTGATGCAAATTGGGCTTGATAAGGCAGAGCCAAAGAGGATTCTTGAAGTGATTAATATCCCTGGTTTGACAAAAGAGAATGTTGCTAGTCATTTGCAGAAACATAGACTTTATTTGAAGAGATCTAGTGGAATGACACTGCAACAAAATGGGATGCCATTTCCTAACACAATCTCAGGGATTACAGAATCCAATATTGTTTTCAGATTGTTTAAAATGAGGTTTAGTGGAATGACACTGCATGTTTATAGAAGGGTGGTTTGTTATTCAGACTCCACCTTAGATATTGATGATTTGGTTCTAAACAGCTTCCACCAGTTTCACCTATTCAGCAATGAGATTTTCAGGATTTGA 750 0.3827 MPNMDGFQFLHRVGKEINVPVIMMSHDDATSALMKAVTHGASDYWIKPLHQNQFRILRKLVARKLRIENNPPRKDNSDFASFIVDATMSVPKKRSSNSKEFDFYESDDCYAPPAKEHRVVWSEELHQEFVNAVMQIGLDKAEPKRILEVINIPGLTKENVASHLQKHRLYLKRSSGMTLQQNGMPFPNTISGITESNIVFRLFKMRFSGMTLHVYRRVVCYSDSTLDIDDLVLNSFHQFHLFSNEIFRI* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0420 249 Gene3D - 114 174 - -
Gso19g0420 249 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 117 169 IPR006447 GO:0003677
Gso19g0420 249 Pfam Myb-like DNA-binding domain 118 167 IPR001005 -
Gso19g0420 249 Gene3D - 1 70 - -
Gso19g0420 249 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 184 IPR045279 GO:0009736
Gso19g0420 249 Pfam Response regulator receiver domain 1 54 IPR001789 GO:0000160
Gso19g0420 249 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 1 184 - -
Gso19g0420 249 SUPERFAMILY CheY-like 1 69 IPR011006 -
Gso19g0420 249 SUPERFAMILY Homeodomain-like 115 173 IPR009057 -
Gso19g0420 249 ProSiteProfiles Response regulatory domain profile. 1 62 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0420 Gso-Chr19 7527060 7529468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0420 1 184 Response Regulator Gene Family AT3G16857 42.056 9.36e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso19g0420 Response_reg 2.1e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0420 - K14491 gmx:102661810 506.138