Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0407 ATGCGAATGAGTTGTAACGGATGTCGTGTTCTGCGCAAAGGGTGTAGCGAAGATTGTAGTATAAGACCGTGTTTGCAATGGATCAAGAACCCGGAGTCACAAGCTAATGCAACTGTTTTTCTTGCCAAGTTCTATGGTCGTGCTGGCCTCATGAACCTCATCAACGCTGGTCCTGAAAACCTTCGTCCTGCCATTTTTCGATCCTTGTTATACGAAGCATGTGGTCGAATTGTGAACCCAATTTATGGTTCGGTGGGTTTGCTATGGTCCGGGAGCTGGCAGCTATGTCAAGCCGCCGTGGAAGCCATTTTGAAAGGCGAGCCGATCACGCCGATAACATCCGAAGCCGCGGCTAATGGGCGGGCCCCACCACTCAAGGCCTACGACATACGCCATGTGTCAAAAGACGAGAACTCGGCAAACGAAACTCCAAAGGCCAAGACCCGGTCCCGGTTCAACCGAACCGGTAGCACACTCATTAAACCAAAGGCTAGCAAGGGAACCCCAACTGGGTTCGTTCCGATTGAACCGGTTGAACCGGAGACGGCAAACCGGACCACAAGCCACGAGTCGGGGCTGAGCCACTTGTCGGAAGCCGCCGTGATGGTGGAGGGAGAAAGCAAAGAAAGCGAAAGCGATGTGTCAGTGGAAACTTCGAATCTATTTCACGAAGAACCGGAGTCGGTTGCGAAGACGAGTGATCGAACCGGTGAAAGTGGTAATGAAATCGGCTTGGAATTGACGCTCGGGTTTGAACCGGTCTCACGTGTGCATCACGTGGTTCCAATGAAGAAGAGAAAGATAATTGCGTCGAAGAGTTATGGTGACTCGGCTGAGAAAGACTCGTGTAAGATGGAGCTGGGGCTTGAGTACCCGGCTTGA 882 0.5193 MRMSCNGCRVLRKGCSEDCSIRPCLQWIKNPESQANATVFLAKFYGRAGLMNLINAGPENLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAILKGEPITPITSEAAANGRAPPLKAYDIRHVSKDENSANETPKAKTRSRFNRTGSTLIKPKASKGTPTGFVPIEPVEPETANRTTSHESGLSHLSEAAVMVEGESKESESDVSVETSNLFHEEPESVAKTSDRTGESGNEIGLELTLGFEPVSRVHHVVPMKKRKIIASKSYGDSAEKDSCKMELGLEYPA* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0407 293 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Gso19g0407 293 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 290 - -
Gso19g0407 293 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Gso19g0407 293 MobiDBLite consensus disorder prediction 159 192 - -
Gso19g0407 293 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 290 - -
Gso19g0407 293 PIRSF AS2 1 292 IPR017414 -
Gso19g0407 293 MobiDBLite consensus disorder prediction 206 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0407 Gso-Chr19 7205040 7207022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0407 1 289 AS2 family AT3G02550 59.310 2.30e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso19g0407 LOB 1.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0407 - - gmx:100786490 575.859