Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0400 ATGGGTCGTGCAAGAATAACCTTGAAACTCATCTCAAATGAGAGATCTCGTAGGTTAACTTTCAAGTCCAGAAGGGAAATACTTATCAAGAAAACCTCTGAATTTTCCACCTTGTGTGGAGTTGAAGCCTGCTTGATTGTGTACGATAATGGCAATGGAGATGTTGCACCAGTAACTTGGCCAAAAGAACCTGTATTGGTACACCCCATCCTTCAAAAGTATGAGTCTCAGAAGAATGAGAGACCTCCCAAGACCTTTGGTATTGAAGACTTTTTGGAGAATAGGAAGAACATGGTTGAAGCTGACATTTCCAAAGTGCATAAACAGATCAGTAACATCAAGTATCCAACTTGGGATCCAAGTTTCACAAACATGGAAGAGAAGCAATTGAAGGCTTTCATTACTCAGGTGAATGCTAAGATTATGGCTTGTGATCATGTGTTGCAAAACAAGCATCAAAGTAAAGCCAACAACATCATGCAAAACATGGCTTGGGGAAGTGCTTCCTCCTCCCATATTCCAAGCCAAATCACCCCAACTCCTAACAATAATGGGAGGGTGTATGTTACAAATCCAATAAATCAGTTTGATGGAGCTAGTAATCATGGAATGAACATGCAACAAGTTGATGCTTGCTATGGTTACATTCCCACAATGGCTCAAGAAAGTACTAATTCTACCTCCTCATATCCAAGGCAATTCAATTGCTTGCAAAACATCCCTCAAAGCCAACCCATATTTGAAGATTTAAAGCCACTTGATTATAAGAATGAGATGGTAGATTTTAGTTATCAAGTTGATGTGCCACTAGATTCAACTAATCAACTTGGTGTGTATGCGGACTGGACTAATAATCAATTCGGTGACTTTGAGGACTGGATTAATCGACCTATTGATGGGTCTAATCAACCAGTTAATGGTGATCTTGTGGGTTTGGACAATAAACCTAATGAATCTATCTTGCAAAATATTCCTGTTCAATATCAGAATAAGCAACAAGGAGGAGCTTTGCATGTCTTGCCACCACCATTGAATGGATTTCAAACAGATTGCTATAATGTGAATTTCTGA 1071 0.3912 MGRARITLKLISNERSRRLTFKSRREILIKKTSEFSTLCGVEACLIVYDNGNGDVAPVTWPKEPVLVHPILQKYESQKNERPPKTFGIEDFLENRKNMVEADISKVHKQISNIKYPTWDPSFTNMEEKQLKAFITQVNAKIMACDHVLQNKHQSKANNIMQNMAWGSASSSHIPSQITPTPNNNGRVYVTNPINQFDGASNHGMNMQQVDACYGYIPTMAQESTNSTSSYPRQFNCLQNIPQSQPIFEDLKPLDYKNEMVDFSYQVDVPLDSTNQLGVYADWTNNQFGDFEDWINRPIDGSNQPVNGDLVGLDNKPNESILQNIPVQYQNKQQGGALHVLPPPLNGFQTDCYNVNF* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0400 356 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Gso19g0400 356 PANTHER PROTEIN, PUTATIVE-RELATED 3 286 - -
Gso19g0400 356 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Gso19g0400 356 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Gso19g0400 356 CDD MADS_SRF_like 2 77 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso19g0400 356 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Gso19g0400 356 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso19g0400 356 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso19g0400 356 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso19g0400 356 SUPERFAMILY SRF-like 1 78 IPR036879 GO:0003677|GO:0046983
Gso19g0400 356 PANTHER MADS BOX PROTEIN 3 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0400 Gso-Chr19 6977405 6978844 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0400 1 141 Type I MADS-box Gene Family AT5G55690 37.931 1.58e-22 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso19g0400 SRF-TF 8.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0400 - - gmx:106797420 740.725