Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0386 ATGTTCCCTTACAGTTCCAACCCCTACCCTTCCTTCCCTTCATCATCTTCTTCTTCATACCCTCCTTTTCCTTTTCTCAACCTTGAGAATGCTTCTGCAAGCAACACCCTTCTTCATGATCCACTTTCTGTGCCTTACATACCAACTCATCATCATAACCCTTCAAGCATCCAAGAAGCACTGAACAATTTGCCAGTCACAGATCATAACTGTGGCGGTGGTGGTGGTTCTGCAATGACCAAACCTGACTCTAATGGTGGTGGTGCTCCTCACTATGGCATTTCTTGTTTCCTCACAAAGAAGCCACCTAAGAAAGACAGGCACAGCAAGATTTACACCTCTCAGGGCTTGAGGGACCGAAGGGTGAGGTTGTCCATTGCGATTGCTCGCAAGTTCTTTGATCTTCAAGACATGCTAGGGTTTGACAAAGCCAGTAACACCCTTGAGTGGCTCTTCAACAAGTCCAAGAGAGCAATTAAGGAGCTTGCAAGGAGCAAGCACAGCAACAACAACAGTGATGAAGGAGCCAAGAGCTTCTCTTCTTCATCTGATTGTGACGATGACTGTGAAGTGGTTTCTGAGATCAAGCAGAAACAACAACAACTCATCACTTGTGATGCTGCTACTACTCAACACAACCTGCAACAAGGGTTGGATTCAGGTGATAACAAGTCACCAACAACATTGGTGGCTGCAAGGGAGAGGATGAAGTTGAAGAGGACACAGAAGGAACCTGCAAAGATAAAGGAGTCAAGGGAGAAAGCAAGAGCAAGAGCAAGGGAAAGGACTAGTAACAAGATTATTATGTGCAATGTTAACACCAACAACAACAACACAGGAAGGAGGGTGCAACAACAAGACTTGAAGAAAAAGTGCCCTGCAATTGAAAACAACCATTCTCAAATCATGCATCAATCAAGTTCATCACCTACTCACAACCTTGTGGGAAATGAAACACCTAGAGATGACTTCAACGTTATCGAGGAATCCATTGTGATCAAGAGAAAGTTGAAGCCATCTTTGATGTCCTCTTCTCATCATCATCATCATCATCACCAAAGCCTTATGATCCCTAAGGAACCACCAAGCTTCAACAACTGTGAGTACCACCCCTTCTCCAATTTGTCTCCAAATTGGGATGCTAATGGATCCACTGGCCGCTCCAACTTCTGTGCCGTAGCTAGCATGAATCTATCCACAGGGCTTCAAATCTTTGGAAAGTCTTGGGAGGAGTGCATCAATCCACGTTAA 1251 0.4476 MFPYSSNPYPSFPSSSSSSYPPFPFLNLENASASNTLLHDPLSVPYIPTHHHNPSSIQEALNNLPVTDHNCGGGGGSAMTKPDSNGGGAPHYGISCFLTKKPPKKDRHSKIYTSQGLRDRRVRLSIAIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSKHSNNNSDEGAKSFSSSSDCDDDCEVVSEIKQKQQQLITCDAATTQHNLQQGLDSGDNKSPTTLVAARERMKLKRTQKEPAKIKESREKARARARERTSNKIIMCNVNTNNNNTGRRVQQQDLKKKCPAIENNHSQIMHQSSSSPTHNLVGNETPRDDFNVIEESIVIKRKLKPSLMSSSHHHHHHHQSLMIPKEPPSFNNCEYHPFSNLSPNWDANGSTGRSNFCAVASMNLSTGLQIFGKSWEECINPR* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0386 416 MobiDBLite consensus disorder prediction 238 261 - -
Gso19g0386 416 ProSiteProfiles TCP domain profile. 104 162 IPR017887 -
Gso19g0386 416 ProSiteProfiles R domain profile. 249 266 IPR017888 -
Gso19g0386 416 MobiDBLite consensus disorder prediction 164 183 - -
Gso19g0386 416 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 4 416 - -
Gso19g0386 416 Pfam TCP family transcription factor 104 267 IPR017887 -
Gso19g0386 416 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 4 416 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0386 Gso-Chr19 6664333 6666480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0386 100 382 TCP Transcription Factor Family AT1G67260 32.639 3.06e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso19g0386 TCP 4.7e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0386 - - gmx:100791288 760.37