Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0380 ATGGACATAGACTATGTTATAAGGAAAGATGAACCACCTACAATCACTGATGAAAGTAGCCCAGCTGACGTTGCGCTATATGAGCAGTGGGAGCGATCCAACCGGCTCAGCGTGATGTTCATCAAGACCAAAATCTCGGCTGGGATACGTGGTTCTGTTGACCAGCATGAAAAGGTCCAAGAATTGCTTAAGGCCATTGATGACCAGTTCATCACTTCAGATAAGACTTTAACAAGCACCTTGATCATGAAGTTCTCTTCTCTTCGGCTCACCAGTGTGAAAGGTGTGCGTGAGTACATCATGAAAATGCGAGATATTTTAGCTCAACTTAAGAAACTAGAGGAAGAAGAAAGGCTTGTAATGGAGATGAGTGATAGTACATTGTTGACTACTTATGGGAAGAACAAAGCAATTAAGTCTCAAGCTAATCAGAAGGGGAATGGTAAAATACCACCTCAAGCTGATATTAAGAAGGTGACAAAGTGTTTCTTTTGCAAGAAGAAGGGACACATGAAGAAGAATTGCCCCGGGTTCCAGAAATGGCTTGAGAAGAAAGGATTTTCTGTTGATACATTGTTCAGGATTGGTTACCGTTGGATTACACAATTACTTGCCCTTGGATGTTATGCAATGCTACTTATGCCCGGTTTTTTACAAGTTGCATATTACTATTTCTTCACAAGCAAAGTAAAGCGAAGCATTGTTTATGGAGATCAGCCTAGAAACAGGTTGGATCTGTATCTACCCGCCAATATTGGTGAACCTAAGCCAGTTTTGATATTTGTAACTGGGGGAGCATGGATTATTGGGTATAAAGCATGGGGCTCCCTTTTAGGACTACAGTTGGCAGAAAGAGGCATTATAGTGGCATGCATTGATTACAGGATTTATCTAATGGGGCAATCTGCTGATGCTCATATTTCTTCTTGTGCTTTACTGGAGCAAGCAGCCAGAGAATCGGAAAAAGTAGAGAGTGTTCCTTGGAGCATTTCCCAGTTAAAAGCTTATCTTGGTTTATCTGGAGGATACAACTTACTGGATTTAGTGGATCACTTCCACAATCGAGGCTTGGATCGTTCGATTTTCTTAAGCATAATGGAAGGTGAAAATTCTTTGAAGGAATTTTCTCCTGAAATCAAAATTCAAGATCCATGCCTCAAATCTTCCATTCCTCACTTCCCCCCTGTATATCTGGTCCATGGAACTGCAGATTATTCCATACCATCAGTTGCCAGGTTAGTGTATAGACTTGAAATTCATTGGTGGTTATATTATTTTTTACTTAATTGA 1290 0.4054 MDIDYVIRKDEPPTITDESSPADVALYEQWERSNRLSVMFIKTKISAGIRGSVDQHEKVQELLKAIDDQFITSDKTLTSTLIMKFSSLRLTSVKGVREYIMKMRDILAQLKKLEEEERLVMEMSDSTLLTTYGKNKAIKSQANQKGNGKIPPQADIKKVTKCFFCKKKGHMKKNCPGFQKWLEKKGFSVDTLFRIGYRWITQLLALGCYAMLLMPGFLQVAYYYFFTSKVKRSIVYGDQPRNRLDLYLPANIGEPKPVLIFVTGGAWIIGYKAWGSLLGLQLAERGIIVACIDYRIYLMGQSADAHISSCALLEQAARESEKVESVPWSISQLKAYLGLSGGYNLLDLVDHFHNRGLDRSIFLSIMEGENSLKEFSPEIKIQDPCLKSSIPHFPPVYLVHGTADYSIPSVARLVYRLEIHWWLYYFLLN* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0380 429 SMART c2hcfinal6 161 177 IPR001878 GO:0003676|GO:0008270
Gso19g0380 429 Pfam BD-FAE 244 296 - -
Gso19g0380 429 PANTHER ARYLACETAMIDE DEACETYLASE 183 295 - -
Gso19g0380 429 PANTHER ARYLACETAMIDE DEACETYLASE 295 410 - -
Gso19g0380 429 SUPERFAMILY alpha/beta-Hydrolases 210 414 IPR029058 -
Gso19g0380 429 Gene3D - 137 185 - -
Gso19g0380 429 Coils Coil 96 116 - -
Gso19g0380 429 ProSiteProfiles Zinc finger CCHC-type profile. 161 176 IPR001878 GO:0003676|GO:0008270
Gso19g0380 429 SUPERFAMILY Retrovirus zinc finger-like domains 160 184 IPR036875 GO:0003676|GO:0008270
Gso19g0380 429 Gene3D alpha/beta hydrolase 297 416 IPR029058 -
Gso19g0380 429 PANTHER ISOPRENYLCYSTEINE ALPHA-CARBONYL METHYLESTERASE ICMEL1-RELATED 183 295 - -
Gso19g0380 429 PANTHER ISOPRENYLCYSTEINE ALPHA-CARBONYL METHYLESTERASE ICMEL1-RELATED 295 410 - -
Gso19g0380 429 Gene3D alpha/beta hydrolase 224 296 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0380 Gso-Chr19 6501167 6514265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0380 195 411 Carbohydrate Esterase AT1G26120 62.948 3.13e-107 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0380 K15889 - gmx:106797289 486.493