Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0369 ATGGAAGCAGAAGAACAATTTGAACTTCCTCATCAATCTCACGATTCTCCGGTTCAAGGCATGGAACGAGTGGTGGCTACGGTGAGCGGCTACCATGGCTCCGAGCGATTCAATCTCATCAAGCTGATTTCACAGGCTGGCGGCAATTACGTTGGTGCTATGTCGAAATCTATAACTCATCTGGTGTGTTGGAAATTTGAAGGAAAGAAATATGATATTGCGCTGAAGTTTAGAATACATGTAGTTAACCACCGATGGGTTGAGGACTGCATAAAGGAAGGAAGGCGTGTTCCAGAAGATTCTTATACCTTGCAAAGTGGACATGAAGTAGGGCCATTGCTACTGGAAGTTCCCCTTGTTCGAGCCAGTAGCCTGACAAAGAAAAAATTGGTCGGTGACAAGTTACATGCTACTGGGTCTGAAAGGAAAAATTCCGACTTCAGTTCTGGAGCCTCTGGAACTTATGTTTTGGAAGATTCTTGTTTAATGAAAAAGCATGAGGAGTCAAGTTCATATTCATCTAGACTGTCAAGGAGGGGAAAAAGGCATATTTGCAATGGTAAGGAAAACACTACTGTGGCTAGACCTTCTCGTAAAGGAAGAAGACTTGCGAGTGATCTTGTTGACAAAGTAGTGTTGGGTCCTTCGATTTTGGATTTAACCACAGATGACCACCTTTTTAGAATGGATAGCCAACAAACTGATGCCGAAGCTACCTCTAGCCTTTCTGTTGGTGTCAATAATAACATTATTCTACAAAATAGTGAAGGACCTAACGCAGGATTAAGTAATCAAAGTAGAACTATCATTGGTGGTTCAAATGATATTGAACAGATCAAAGATTCAAGTCATATATCTAAACCTAGAAATTCAACTTCATTTATTGAAGATCCCCTACCTGTGCCACAAACATCAATTGATTTATGTTCCAGTGATGATGAAAAGTTCACAGATGGTGATCAGGCTGATAATGTTGCTGGTTTACCTACTTCAACAGAGATGTCATGTGTAATATGTCTCACAGAATTCAGCTCAACACGGGGGATTCTGCCATGTGGACATCGATTTTGTTTTCCATGCATCCAGAATTGGGCTGATCATACGACTTCAATGAGAAAAACATCAACATGCCCTTTGTGCAAGGCAAGTTTTATGATGATTAAGAAAGTTGAGCATGCAGCCACCGCTGATCAAAAAATATACTCCCAGACAATCCCATGTGACAATTCAGCCTCAGTTATTTTTATCCCCGTGGATCAAAATTTACCAGATAATATCTTTGAGTCTGCACAGTCAAATGCTTGTGTAGTTTGCCGTGGTCGGGAACCAGAGGATCTCCTTGAGAGTTGCGATGTTTGCCACATTCGAAAGATCCATTCCTATTGCATGGACCCTCCTCTACGGCCATGGATATGCACTCACTGCAAGGAACTTCGGATGCATTATCGTAGTAATCACTTGTATTAG 1467 0.4151 MEAEEQFELPHQSHDSPVQGMERVVATVSGYHGSERFNLIKLISQAGGNYVGAMSKSITHLVCWKFEGKKYDIALKFRIHVVNHRWVEDCIKEGRRVPEDSYTLQSGHEVGPLLLEVPLVRASSLTKKKLVGDKLHATGSERKNSDFSSGASGTYVLEDSCLMKKHEESSSYSSRLSRRGKRHICNGKENTTVARPSRKGRRLASDLVDKVVLGPSILDLTTDDHLFRMDSQQTDAEATSSLSVGVNNNIILQNSEGPNAGLSNQSRTIIGGSNDIEQIKDSSHISKPRNSTSFIEDPLPVPQTSIDLCSSDDEKFTDGDQADNVAGLPTSTEMSCVICLTEFSSTRGILPCGHRFCFPCIQNWADHTTSMRKTSTCPLCKASFMMIKKVEHAATADQKIYSQTIPCDNSASVIFIPVDQNLPDNIFESAQSNACVVCRGREPEDLLESCDVCHIRKIHSYCMDPPLRPWICTHCKELRMHYRSNHLY* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0369 488 SMART BRCT_7 18 94 IPR001357 -
Gso19g0369 488 PANTHER F5A8.9 PROTEIN 153 483 - -
Gso19g0369 488 PANTHER F5A8.9 PROTEIN 17 165 - -
Gso19g0369 488 ProSitePatterns Zinc finger RING-type signature. 352 361 IPR017907 -
Gso19g0369 488 Pfam twin BRCT domain 24 86 IPR001357 -
Gso19g0369 488 SUPERFAMILY BRCT domain 17 105 IPR036420 -
Gso19g0369 488 Pfam Zinc finger, C3HC4 type (RING finger) 336 380 IPR018957 GO:0046872
Gso19g0369 488 ProSiteProfiles BRCT domain profile. 13 104 IPR001357 -
Gso19g0369 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 423 487 IPR013083 -
Gso19g0369 488 Gene3D BRCT domain 17 103 IPR036420 -
Gso19g0369 488 ProSiteProfiles Zinc finger RING-type profile. 336 381 IPR001841 -
Gso19g0369 488 SMART ring_2 336 380 IPR001841 -
Gso19g0369 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 406 IPR013083 -
Gso19g0369 488 SUPERFAMILY RING/U-box 331 388 - -
Gso19g0369 488 SUPERFAMILY FYVE/PHD zinc finger 430 478 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0369 Gso-Chr19 6195751 6202219 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0369 42 110 Core DNA Replication Machinery Family AT4G02110 42.254 6.61e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0369 - - gmx:100815034 984.556